RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= 537021.9.peg.477_1
(235 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 43.8 bits (103), Expect = 3e-05
Identities = 52/264 (19%), Positives = 84/264 (31%), Gaps = 88/264 (33%)
Query: 23 LRNRAIEYVLFFGIPCTAILLM---LPKEIIQTLYERGAFTAQDTI------LVSSYLSI 73
L + ++E+VL +P TA + L ++ + L E A D LV +L
Sbjct: 11 LSHGSLEHVLL--VP-TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL-- 65
Query: 74 YSTEIVGFLLSRVLLSEFYARNDVKTPAKFYILSIVMG-FVIAIGLFPFIGGYGIATAEV 132
G++ S V S+ + V L++ + F ++ G I
Sbjct: 66 ------GYVSSLVEPSKVGQFDQV--------LNLCLTEFENC-----YLEGNDIHALAA 106
Query: 133 SWVWVNTICLAVA--LLK-----RRQIDLPFQTIY-------------RILSIF------ 166
+ N L L+K R PF ++++IF
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 167 ------------ISSGLMGMFIVFFKPCLFNQLS--AETAFSPF-KNLAII--LSGAVLV 209
L+G I F L ++L A F + L I+ L
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETL-SELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 210 ----YLCS--ISL-LLGKGFLASL 226
YL S IS L+G + L
Sbjct: 226 PDKDYLLSIPISCPLIG---VIQL 246
Score = 40.3 bits (94), Expect = 4e-04
Identities = 45/227 (19%), Positives = 72/227 (31%), Gaps = 80/227 (35%)
Query: 3 ALLPKLSSAIQLENKQQSSELRN--RAIEYVLFFGIPCT-----AILLMLPKEIIQTLYE 55
AL KL + ++N A P A+ + + Q L
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMA---KRPFDKKSNSALFRAVGEGNAQ-LV- 157
Query: 56 RGA-FTAQDTILVSSYL----SIYST--EIVGFLLSRV--LLSE----------FYARN- 95
A F Q Y +Y T +VG L+ LSE + +
Sbjct: 158 --AIFGGQGNT--DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 96 DV--------KTPAKFYILSI-----VMG------FVIA---IGLFP------FIG--GY 125
++ TP K Y+LSI ++G +V+ +G P G G+
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 126 --GIATAEV-----SW--VWVNTICLAVALL----KRRQIDLPFQTI 159
G+ TA SW +V+ A+ +L R P ++
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVR-KAITVLFFIGVRCYEAYPNTSL 319
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 30.9 bits (69), Expect = 0.25
Identities = 13/77 (16%), Positives = 28/77 (36%)
Query: 103 FYILSIVMGFVIAIGLFPFIGGYGIATAEVSWVWVNTICLAVALLKRRQIDLPFQTIYRI 162
Y +SI + V L I + + V + + + + K R P +++
Sbjct: 647 IYAVSITIRIVFGFMLIALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKL 706
Query: 163 LSIFISSGLMGMFIVFF 179
IF + ++G +
Sbjct: 707 KEIFATGVVLGGYQAIM 723
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976,
cytoplasm, oxidoreductase, phospholipid biosynthesis,
structural genomics; HET: EPE; 2.10A {Coxiella burnetii
rsa 493}
Length = 356
Score = 29.1 bits (64), Expect = 0.97
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 137 VNTICLAVALLKRRQIDLP-FQTIYRIL 163
+ AL ++ I++P ++RIL
Sbjct: 308 LYNTDQVHALAQKHAIEMPLTFQVHRIL 335
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A
{Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Length = 335
Score = 28.8 bits (63), Expect = 1.2
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 137 VNTICLAVALLKRRQIDLP-FQTIYRIL 163
T A L + D +IYR+L
Sbjct: 291 YKTAEKAYRLSSKINADTKLLDSIYRVL 318
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genomics,
joint center for structural genomics, JCSG; HET: MSE NDP
G3H G3P; 2.00A {Thermotoga maritima MSB8}
Length = 335
Score = 28.3 bits (62), Expect = 1.6
Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 137 VNTICLAVALLKRRQIDLP-FQTIYRIL 163
T+ + + K +ID+P + +YR++
Sbjct: 283 AFTVKAVMKIAKENKIDMPISEEVYRVV 310
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter)
MATE-like MDR efflux...; multidrug transporter,
cation-bound, transport protein; 3.65A {Vibrio cholerae}
PDB: 3mku_A
Length = 460
Score = 27.8 bits (61), Expect = 2.1
Identities = 17/148 (11%), Positives = 41/148 (27%), Gaps = 5/148 (3%)
Query: 1 MAALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFT 60
AA+ ++ + ++ + ++ N + L + ++ ++I E
Sbjct: 294 GAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVV 353
Query: 61 AQDTILVSSYLSIYSTEIVGFLLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP 120
A L L + + V D+ +S + + +
Sbjct: 354 A----LAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILG 409
Query: 121 FIGGYGIATAEVSWVWV-NTICLAVALL 147
W+ I L+ A L
Sbjct: 410 MTNWLTEQPLGAKGFWLGFIIGLSAAAL 437
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A
{Escherichia coli K12} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
PDB: 1azy_A 1tpt_A 1otp_A
Length = 440
Score = 26.3 bits (57), Expect = 6.6
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 43 LMLPKEIIQTLYERGAFTAQDTI-LVSSYLS--IYSTEIVGFL 82
L L +EII+ + A + ++ ++ I +I
Sbjct: 1 LFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALA 43
>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP
elongation complex, transcription/DNA/RNA complex; 2.10A
{Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A
1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A*
3e3j_C* 1aro_P 2pi4_A* 2pi5_A
Length = 883
Score = 25.9 bits (56), Expect = 9.0
Identities = 12/62 (19%), Positives = 23/62 (37%)
Query: 1 MAALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFT 60
+ LLPK+ + I ++ ++ R + I A+ + K + L T
Sbjct: 74 ITTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIKPEAVAYITIKTTLACLTSADNTT 133
Query: 61 AQ 62
Q
Sbjct: 134 VQ 135
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.329 0.142 0.411
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,825,364
Number of extensions: 78528
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 17
Length of query: 235
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 146
Effective length of database: 3,535,514
Effective search space: 516185044
Effective search space used: 516185044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.5 bits)