BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.477_1
         (235 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.477_1 
          Length = 235

 Score =  468 bits (1203), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/235 (100%), Positives = 235/235 (100%)

Query: 1   MAALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFT 60
           MAALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFT
Sbjct: 1   MAALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFT 60

Query: 61  AQDTILVSSYLSIYSTEIVGFLLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP 120
           AQDTILVSSYLSIYSTEIVGFLLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP
Sbjct: 61  AQDTILVSSYLSIYSTEIVGFLLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP 120

Query: 121 FIGGYGIATAEVSWVWVNTICLAVALLKRRQIDLPFQTIYRILSIFISSGLMGMFIVFFK 180
           FIGGYGIATAEVSWVWVNTICLAVALLKRRQIDLPFQTIYRILSIFISSGLMGMFIVFFK
Sbjct: 121 FIGGYGIATAEVSWVWVNTICLAVALLKRRQIDLPFQTIYRILSIFISSGLMGMFIVFFK 180

Query: 181 PCLFNQLSAETAFSPFKNLAIILSGAVLVYLCSISLLLGKGFLASLKYSLKTDKG 235
           PCLFNQLSAETAFSPFKNLAIILSGAVLVYLCSISLLLGKGFLASLKYSLKTDKG
Sbjct: 181 PCLFNQLSAETAFSPFKNLAIILSGAVLVYLCSISLLLGKGFLASLKYSLKTDKG 235


>gi|254780793|ref|YP_003065206.1| integral membrane protein MviN [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 518

 Score =  277 bits (709), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 145/232 (62%), Positives = 181/232 (78%), Gaps = 2/232 (0%)

Query: 1   MAALLPKLSSAIQLENKQQSSELRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYERGAFT 60
           M  +LP LS +++ +NKQ+S EL+N+AIE + FFGIP    L ML KEI+QTLYERGAF+
Sbjct: 287 MIVILPALSRSLRSKNKQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFS 346

Query: 61  AQDTILVSSYLSIYSTEIVGFLLSRVLLSEFYARNDVKTPAKFYILSIVMGFVIAIGLFP 120
           +Q+TILVSS+LSIYS  I+  +LS+ L + FYA+ND+K P KF I+SI +   IAIG FP
Sbjct: 347 SQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAINLTIAIGSFP 406

Query: 121 FIGGYGIATAEVSWVWVNTICLAVALLKRRQIDLPFQTIYRILSIFISSGLMGMFIVFFK 180
           FIGGYGIA AEVS  WVNTICLA+ LLKR+QI+LPF+TIYRILS+ IS+GLMG FI+ F+
Sbjct: 407 FIGGYGIALAEVSSSWVNTICLAITLLKRKQINLPFKTIYRILSVSISAGLMGFFIILFR 466

Query: 181 PCLFNQL-SAETAFSPFKNLAIILSGAVLVYLCSISLLLGKGFLASLKYSLK 231
           P  FNQ  SA T F PFKNL I+LSGA+LVYL SI L LGK FL+ L+  ++
Sbjct: 467 P-YFNQFSSATTFFDPFKNLVIMLSGAMLVYLFSIFLFLGKDFLSPLQQMIR 517


>gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 466

 Score = 24.3 bits (51), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 168 SSGLMGMFIVFFKPCLFNQLSAETAFSPFKNLAIILSGAVLVYLCSISLLLG 219
           +SGL GM I F +  + +   A +  S  KNL +I +G + + L S+   LG
Sbjct: 146 ASGLPGMSIDFDEQVIVSSTGALSFSSVPKNLLVIGAGVIGLELGSVWTRLG 197


>gi|254781172|ref|YP_003065585.1| NAD-dependent DNA ligase LigA [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 731

 Score = 23.1 bits (48), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 15/55 (27%)

Query: 3   ALLPKLSSAIQLENKQQSSEL---------------RNRAIEYVLFFGIPCTAIL 42
           ALL ++S +I    K  SSE+               R++A EYV   G   +AIL
Sbjct: 627 ALLKEVSPSIGRHEKNVSSEIENKKLVFTGTLQKIQRHKAQEYVTQLGAVVSAIL 681


>gi|254780578|ref|YP_003064991.1| phosphatidylserine synthase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 298

 Score = 22.7 bits (47), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 10/85 (11%)

Query: 18  QQSSELRNRAIEYVLFFGIPCTAILLMLPKEI------IQTLYERGA--FTAQDTILVSS 69
               E  N   EY +    P  AILLMLP  I      I  +Y  G+  +    + L+ S
Sbjct: 166 NDCDEKDNWKSEYFVGVPAPLGAILLMLPLYINFLGFKISVIYGYGSTIYAMIISFLLCS 225

Query: 70  YLSIYSTEIVG--FLLSRVLLSEFY 92
            L ++S + +   F+L  VL S  Y
Sbjct: 226 RLPVWSGKKIHRKFVLPIVLCSVAY 250


>gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 833

 Score = 22.7 bits (47), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 23 LRNRAIEYVLFFGIPCTAILLMLPKEIIQTLYER 56
          +RN     +L+  I C  +L+ LP  + Q++ +R
Sbjct: 1  MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.329    0.142    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,268
Number of Sequences: 1233
Number of extensions: 5108
Number of successful extensions: 20
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 9
length of query: 235
length of database: 328,796
effective HSP length: 71
effective length of query: 164
effective length of database: 241,253
effective search space: 39565492
effective search space used: 39565492
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 37 (18.9 bits)