Query 537021.9.peg.493_1 Match_columns 64 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Tue May 24 22:18:21 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_493.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1z8y_J Spike glycoprotein E2; 80.7 1.4 4.2E-05 23.6 2.9 26 8-33 9-35 (36) 2 >1dxs_A P53-like transcription 15.4 17 0.00051 17.6 -1.8 30 4-33 21-57 (80) 3 >1rg6_A Second splice variant 13.9 15 0.00043 18.0 -2.5 33 4-36 22-62 (75) 4 >3cxb_A Protein SIFA; SIFA, SK 12.1 41 0.0012 15.6 -0.6 12 1-12 30-42 (138) 5 >2fym_A Enolase; RNA degradoso 9.0 1.5E+02 0.0043 12.6 1.4 13 19-31 111-123 (127) 6 >2al1_A Enolase 1, 2-phospho-D 8.8 1.5E+02 0.0044 12.5 1.4 13 19-31 111-123 (127) 7 >1r7l_A Phage protein; structu 7.3 1.7E+02 0.0051 12.2 1.2 10 21-30 47-56 (65) 8 >3g73_A Forkhead box protein M 7.2 1E+02 0.003 13.5 -0.2 29 19-49 25-55 (142) 9 >2ptz_A Enolase; lyase, glycol 6.1 2E+02 0.006 11.8 1.4 13 19-31 113-125 (129) 10 >3kik_A Protein SUS1; articula 5.8 2.1E+02 0.0062 11.7 1.6 13 41-53 37-49 (96) No 1 >>1z8y_J Spike glycoprotein E2; icosahedral enveloped virus, cryo-electron microscopy, icosahedral virus; 9.00A {Sindbis virus} (J:) Probab=80.70 E-value=1.4 Score=23.59 Aligned_cols=26 Identities=35% Similarity=0.811 Sum_probs=20.6 Q ss_pred HHCCCHHHHHHHHHHH-HHHHHHHHHH Q ss_conf 3204089999999999-9999876899 Q 537021.9.peg.4 8 FASSNIFIMIGMIISM-AICKAHRNCI 33 (64) Q Consensus 8 fassnifimigmiism-aickahrnci 33 (64) ..+-..+++||.-.|. -+|||.|.|+ T Consensus 9 l~g~~la~~iG~~~a~~C~ckARRdCl 35 (36) T 1z8y_J 9 VASATVAMMIGVTVAVLCACLARRECL 35 (36) T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999958999999999998742 No 2 >>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} (A:) Probab=15.37 E-value=17 Score=17.63 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=22.8 Q ss_pred HHHHHHCCCHHHH-------HHHHHHHHHHHHHHHHH Q ss_conf 0333320408999-------99999999999876899 Q 537021.9.peg.4 4 KIDYFASSNIFIM-------IGMIISMAICKAHRNCI 33 (64) Q Consensus 4 kidyfassnifim-------igmiismaickahrnci 33 (64) -||||.+-|+.-| +--.-+|.|-..|||+| T Consensus 21 ~id~Ft~qgl~si~qL~~~tlEDL~~mkIp~q~r~~I 57 (80) T 1dxs_A 21 CIEYFTSQGLQSIYHLQNLTIEDLGALKIPEQYRMTI 57 (80) T ss_dssp SHHHHHTTTCCCHHHHHTCCHHHHHHTTCCTTTHHHH T ss_pred HHHHHHHCCCHHHHHHHHCCHHHHHCCCCCHHHHHHH T ss_conf 9999998252059988516898887177738888778 No 3 >>1rg6_A Second splice variant P63; P73 SAM-like domain, gene regulation; NMR {Homo sapiens} (A:) Probab=13.94 E-value=15 Score=18.04 Aligned_cols=33 Identities=27% Similarity=0.570 Sum_probs=23.7 Q ss_pred HHHHHHCCCHHHH-------HHHHHHHHHHHHHHHHH-HHH Q ss_conf 0333320408999-------99999999999876899-999 Q 537021.9.peg.4 4 KIDYFASSNIFIM-------IGMIISMAICKAHRNCI-RGI 36 (64) Q Consensus 4 kidyfassnifim-------igmiismaickahrnci-rgi 36 (64) -||||.+.|+.-+ +.-+-+|.|-..||++| ||+ T Consensus 22 cid~Ft~qgl~si~qL~~~tlEDL~~mkIp~q~r~~IWk~l 62 (75) T 1rg6_A 22 CLDYFTTQGLTTIYQIEHYSMDDLASLKIPEQFRHAIWKGI 62 (75) T ss_dssp SHHHHHHHTCCSGGGGSSCCHHHHHTTTCCTHHHHHHHHHH T ss_pred HHHHHHHCCCHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHH T ss_conf 99999982521599885168988862777377761100648 No 4 >>3cxb_A Protein SIFA; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Salmonella typhimurium} PDB: 3hw2_A (A:1-138) Probab=12.14 E-value=41 Score=15.57 Aligned_cols=12 Identities=58% Similarity=1.295 Sum_probs=7.6 Q ss_pred CCCHH-HHHHCCC Q ss_conf 94003-3332040 Q 537021.9.peg.4 1 LWDKI-DYFASSN 12 (64) Q Consensus 1 lwdki-dyfassn 12 (64) ||||| |+|.+.. T Consensus 30 lWeKiKDfF~~t~ 42 (138) T 3cxb_A 30 LWEKIKDFFFSTG 42 (138) T ss_dssp HHHHHGGGBCTTH T ss_pred HHHHHHHHHCCCC T ss_conf 9999999860566 No 5 >>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} (A:1-127) Probab=8.98 E-value=1.5e+02 Score=12.59 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=9.6 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999998768 Q 537021.9.peg.4 19 MIISMAICKAHRN 31 (64) Q Consensus 19 miismaickahrn 31 (64) .-+|||+|||--+ T Consensus 111 lavS~A~akA~A~ 123 (127) T 2fym_A 111 LAVSLANAKAAAA 123 (127) T ss_dssp HHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHH T ss_conf 1004888765553 No 6 >>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} (A:1-127) Probab=8.75 E-value=1.5e+02 Score=12.54 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=8.6 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999998768 Q 537021.9.peg.4 19 MIISMAICKAHRN 31 (64) Q Consensus 19 miismaickahrn 31 (64) .-.|||+|||--+ T Consensus 111 lavS~A~akA~A~ 123 (127) T 2al1_A 111 LGVSLAASRAAAA 123 (127) T ss_dssp HHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHH T ss_conf 1038999999886 No 7 >>1r7l_A Phage protein; structural genomics, two layers alpha-beta sandwich, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Bacillus cereus} (A:46-110) Probab=7.31 E-value=1.7e+02 Score=12.17 Aligned_cols=10 Identities=50% Similarity=0.750 Sum_probs=6.9 Q ss_pred HHHHHHHHHH Q ss_conf 9999999876 Q 537021.9.peg.4 21 ISMAICKAHR 30 (64) Q Consensus 21 ismaickahr 30 (64) -.|||||..- T Consensus 47 apmaickgal 56 (65) T 1r7l_A 47 APMAICKGAL 56 (65) T ss_dssp HHHHHHHHHH T ss_pred CCHHHHHCCH T ss_conf 6267764302 No 8 >>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1; HET: DNA; 2.21A {Homo sapiens} (A:) Probab=7.19 E-value=1e+02 Score=13.46 Aligned_cols=29 Identities=28% Similarity=0.651 Sum_probs=19.0 Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999--8768999999999999999999 Q 537021.9.peg.4 19 MIISMAICK--AHRNCIRGIISWIIWIEEIKYY 49 (64) Q Consensus 19 miismaick--ahrncirgiiswiiwieeikyy 49 (64) .+|.|||-. .++-.+..|..||. +..-|| T Consensus 25 ~LI~~Ai~~sp~~~ltl~eIY~~i~--~~fpyf 55 (142) T 3g73_A 25 AMIQFAINSTERKRMTLKDIYTWIE--DHFPYF 55 (142) T ss_dssp HHHHHHHHTSTTSEECHHHHHHHHH--HHCTHH T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHH--HHCCCC T ss_conf 9999999869777753999999999--858200 No 9 >>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei} (A:1-129) Probab=6.07 E-value=2e+02 Score=11.80 Aligned_cols=13 Identities=46% Similarity=0.363 Sum_probs=9.7 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999998768 Q 537021.9.peg.4 19 MIISMAICKAHRN 31 (64) Q Consensus 19 miismaickahrn 31 (64) +-.|||+|||--+ T Consensus 113 lavS~A~akA~A~ 125 (129) T 2ptz_A 113 LGCSMAISKAAAA 125 (129) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 0678998865443 No 10 >>3kik_A Protein SUS1; articulated hirpin fold, SAGA complex, activator, chromatin regulator, metal-binding, nucleus, transcription; 2.10A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A (A:) Probab=5.85 E-value=2.1e+02 Score=11.73 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=10.9 Q ss_pred HHHHHHHHHHHHC Q ss_conf 9999999996214 Q 537021.9.peg.4 41 IWIEEIKYYCKEA 53 (64) Q Consensus 41 iwieeikyyckea 53 (64) =|..+++-+|++. T Consensus 37 GW~Devk~~~r~~ 49 (96) T 3kik_A 37 GWVDKVKDLTKSE 49 (96) T ss_dssp THHHHHHHHHHHH T ss_pred CCHHHHHHHHHHH T ss_conf 7699999999999 Done!