Query 537021.9.peg.509_1 Match_columns 45 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Tue May 24 20:54:38 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_509.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3cec_A Putative antidote prot 15.0 52 0.0015 15.8 0.6 18 24-41 28-45 (56) 2 >2ict_A Antitoxin HIGA; helix- 11.9 72 0.0021 15.1 0.6 18 24-41 18-35 (46) 3 >2pv4_A Uncharacterized protei 8.3 1.6E+02 0.0049 13.2 1.3 20 9-28 126-145 (145) 4 >2w25_A Probable transcription 7.7 1.8E+02 0.0053 13.0 1.3 28 14-41 8-35 (56) 5 >2w0y_A APH, alkaline phosphat 7.1 1.3E+02 0.0038 13.8 0.3 21 16-36 27-47 (62) 6 >1sfu_A 34L protein; protein/Z 5.4 1.9E+02 0.0055 12.9 0.4 15 27-41 29-43 (75) 7 >2ia0_A Putative HTH-type tran 5.3 2.6E+02 0.0078 12.2 1.3 28 14-41 18-45 (66) 8 >1g5h_A Mitochondrial DNA poly 5.3 94 0.0028 14.4 -1.2 23 15-37 14-36 (54) 9 >3i4p_A Transcriptional regula 5.2 2.3E+02 0.0068 12.5 0.7 28 14-41 4-31 (53) 10 >2d0o_A DIOL dehydratase-react 5.2 1.5E+02 0.0043 13.5 -0.3 36 5-40 54-92 (131) No 1 >>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102} (A:1-56) Probab=14.97 E-value=52 Score=15.77 Aligned_cols=18 Identities=11% Similarity=0.289 Sum_probs=14.3 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 677651998875321776 Q 537021.9.peg.5 24 KIMAITAKELSKRISISR 41 (45) Q Consensus 24 kimaitakelskrisisr 41 (45) .-|.++.++|.+++.+|| T Consensus 28 e~~gis~~~lA~~lgvs~ 45 (56) T 3cec_A 28 DDLDINTANFAEILGVSN 45 (56) T ss_dssp HHHTCCHHHHHHHHTSCH T ss_pred HHCCCCHHHHHHHHCCCH T ss_conf 987999999999978278 No 2 >>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.63A {Escherichia coli CFT073} (A:1-46) Probab=11.85 E-value=72 Score=15.05 Aligned_cols=18 Identities=11% Similarity=0.364 Sum_probs=13.7 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 677651998875321776 Q 537021.9.peg.5 24 KIMAITAKELSKRISISR 41 (45) Q Consensus 24 kimaitakelskrisisr 41 (45) .-|.++..|+.+++.+|| T Consensus 18 e~~gis~~~lA~~lgvs~ 35 (46) T 2ict_A 18 DELNVSLREFARAXEIAP 35 (46) T ss_dssp HHHTCCHHHHHHHHTCCH T ss_pred HHCCCCHHHHHHHHHHHH T ss_conf 997999999999997778 No 3 >>2pv4_A Uncharacterized protein; YP_928494.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Shewanella amazonensis SB2B} (A:) Probab=8.30 E-value=1.6e+02 Score=13.23 Aligned_cols=20 Identities=35% Similarity=0.442 Sum_probs=11.2 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 66666646766533467765 Q 537021.9.peg.5 9 LKKALIDFSLISAHKKIMAI 28 (45) Q Consensus 9 lkkalidfslisahkkimai 28 (45) ||||--|-++...-|.+||| T Consensus 126 LKKAR~d~~m~~~fk~V~a~ 145 (145) T 2pv4_A 126 LKKARTDRSXYNSXREVXGI 145 (145) T ss_dssp HHHHTTCHHHHHHHHHHHTC T ss_pred HHHHCCCHHHHHHHHHHHCC T ss_conf 99874288889889999749 No 4 >>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A (A:1-56) Probab=7.66 E-value=1.8e+02 Score=13.04 Aligned_cols=28 Identities=29% Similarity=0.201 Sum_probs=18.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6467665334677651998875321776 Q 537021.9.peg.5 14 IDFSLISAHKKIMAITAKELSKRISISR 41 (45) Q Consensus 14 idfslisahkkimaitakelskrisisr 41 (45) .|..++.+-.+--.++..|+++++.+|+ T Consensus 8 ~D~~Il~~Lq~~~r~~~~elA~~lg~S~ 35 (56) T 2w25_A 8 IDRILVRELAADGRATLSELATRAGLSV 35 (56) T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCH T ss_conf 9999999999848999999999989099 No 5 >>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A {Halobacterium salinarum R1} (A:365-426) Probab=7.06 E-value=1.3e+02 Score=13.78 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=17.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 676653346776519988753 Q 537021.9.peg.5 16 FSLISAHKKIMAITAKELSKR 36 (45) Q Consensus 16 fslisahkkimaitakelskr 36 (45) -|...||..|.|.|..|..|- T Consensus 27 esivaahtgitaltdrevakl 47 (62) T 2w0y_A 27 ESIVAAHTGITALTDREVAKL 47 (62) T ss_dssp HHHHHHHSSCCCCCHHHHHHH T ss_pred CHHHHHCCCCCCCCHHHHHHH T ss_conf 034440379777787888765 No 6 >>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} (A:) Probab=5.44 E-value=1.9e+02 Score=12.94 Aligned_cols=15 Identities=40% Similarity=0.499 Sum_probs=11.7 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 651998875321776 Q 537021.9.peg.5 27 AITAKELSKRISISR 41 (45) Q Consensus 27 aitakelskrisisr 41 (45) .+||++|+|.+.+++ T Consensus 29 ~~tA~~lAk~Lg~~K 43 (75) T 1sfu_A 29 YTTAISLSNRLKINK 43 (75) T ss_dssp EECHHHHHHHTTCCH T ss_pred CCHHHHHHHHHCCHH T ss_conf 221999998863008 No 7 >>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} (A:1-66) Probab=5.29 E-value=2.6e+02 Score=12.18 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=18.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6467665334677651998875321776 Q 537021.9.peg.5 14 IDFSLISAHKKIMAITAKELSKRISISR 41 (45) Q Consensus 14 idfslisahkkimaitakelskrisisr 41 (45) +|..++.+-.+---++..||++++.+|+ T Consensus 18 ~D~~IL~~L~~~~r~s~~ela~~lgls~ 45 (66) T 2ia0_A 18 LDRNILRLLKKDARLTISELSEQLKKPE 45 (66) T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCH T ss_conf 9999999999848999999999989099 No 8 >>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} (A:89-142) Probab=5.28 E-value=94 Score=14.45 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=13.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 46766533467765199887532 Q 537021.9.peg.5 15 DFSLISAHKKIMAITAKELSKRI 37 (45) Q Consensus 15 dfslisahkkimaitakelskri 37 (45) .|.|+||..---....||+||.- T Consensus 14 ~frlvsae~lreilqdkelskeq 36 (54) T 1g5h_A 14 AFRLVSPESIREILQDREPSKEQ 36 (54) T ss_dssp CCEEECHHHHHHHHCC---CHHH T ss_pred CCCCCCCCCCCCCCCCCCCCHHH T ss_conf 65545564335400321132033 No 9 >>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str} (A:1-53) Probab=5.22 E-value=2.3e+02 Score=12.50 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=14.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6467665334677651998875321776 Q 537021.9.peg.5 14 IDFSLISAHKKIMAITAKELSKRISISR 41 (45) Q Consensus 14 idfslisahkkimaitakelskrisisr 41 (45) +|..++..-.+=--++..|+++++.+|+ T Consensus 4 ~D~~IL~~L~~dar~s~~elA~~lgis~ 31 (53) T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGLST 31 (53) T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTCCH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCH T ss_conf 9999999999858999999999989199 No 10 >>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} (A:1-76,A:369-404,A:592-610) Probab=5.21 E-value=1.5e+02 Score=13.50 Aligned_cols=36 Identities=28% Similarity=0.516 Sum_probs=25.7 Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 32236666---6646766533467765199887532177 Q 537021.9.peg.5 5 IGISLKKA---LIDFSLISAHKKIMAITAKELSKRISIS 40 (45) Q Consensus 5 igislkka---lidfslisahkkimaitakelskrisis 40 (45) |.-.|+++ .-|+++|.-+.--|+.-|.|+++++.+. T Consensus 54 I~kALekAGls~~DIdlIeINEA~m~~ia~~~~~~~~~~ 92 (131) T 2d0o_A 54 LALVARGAGIAVSDISLIRINEAQMAMIAREIEQKLNID 92 (131) T ss_dssp HHHHHHHHTCCGGGEEEEEEEECCHHHHHHHHHHHHCCE T ss_pred HHHHHHHCCCCHHHHHHHHHCCCEEEHHHHHHHHHHCCH T ss_conf 999999829987772333321472004688999972851 Done!