Query 537021.9.peg.509_1 Match_columns 45 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 24 20:09:13 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_509.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1oo0_A MAGO nashi protein; RNA 10.0 48 0.002 15.2 -0.1 13 15-27 134-146 (147) 2 2pv4_A Uncharacterized protein 8.6 1.1E+02 0.0046 13.3 1.3 21 8-28 125-145 (145) 3 3kz3_A Repressor protein CI; f 5.1 1.9E+02 0.0081 12.1 1.6 24 18-41 16-39 (80) 4 1dt7_X Cellular tumor antigen 4.8 1.7E+02 0.0072 12.4 0.7 11 19-29 11-21 (26) 5 2eby_A Putative HTH-type trans 4.4 1.7E+02 0.0072 12.4 0.4 16 26-41 23-38 (113) 6 1qbj_A Protein (double-strande 4.4 1.7E+02 0.0069 12.4 0.3 16 26-41 26-41 (81) 7 1v60_A BOLA1, riken cDNA 18100 4.3 2.2E+02 0.0092 11.8 1.6 27 11-37 70-96 (123) 8 1sfu_A 34L protein; protein/Z- 3.9 2.1E+02 0.0088 11.9 0.5 13 27-39 29-41 (75) 9 2zvm_U DNA polymerase IOTA, pr 3.8 94 0.0039 13.7 -1.4 12 9-20 5-16 (26) 10 2dhm_A Protein BOLA; stationar 3.5 2.6E+02 0.011 11.4 1.0 27 11-37 53-79 (107) No 1 >1oo0_A MAGO nashi protein; RNA recognition motif, splicing, protein complex, EXON junction complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.232.1.1 PDB: 1rk8_B 2x1g_B 1hl6_B 2j0s_C* 2j0q_C* 2hyi_A* 2xb2_C* 3ex7_A* 1p27_A Probab=10.04 E-value=48 Score=15.18 Aligned_cols=13 Identities=54% Similarity=0.572 Sum_probs=10.2 Q ss_pred HHHHHHHHHHHHH Q ss_conf 4676653346776 Q 537021.9.peg.5 15 DFSLISAHKKIMA 27 (45) Q Consensus 15 dfslisahkkima 27 (45) -||||+.|-||-. T Consensus 134 vfsLi~lHfkikP 146 (147) T 1oo0_A 134 VFSLIGLHFKIKP 146 (147) T ss_dssp HHHHHHHHHTSCC T ss_pred HHHHHHHHCCCCC T ss_conf 9998764011136 No 2 >2pv4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.95A {Shewanella amazonensis SB2B} SCOP: a.286.1.1 Probab=8.58 E-value=1.1e+02 Score=13.33 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=12.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 366666646766533467765 Q 537021.9.peg.5 8 SLKKALIDFSLISAHKKIMAI 28 (45) Q Consensus 8 slkkalidfslisahkkimai 28 (45) -||||--|-++...-|.+||| T Consensus 125 qLKKAR~d~~m~~~fk~V~~~ 145 (145) T 2pv4_A 125 KLKKARTDRSMYNSMREVMGI 145 (145) T ss_dssp HHHHHTTCHHHHHHHHHHHTC T ss_pred HHHHHCCCHHHHHHHHHHHCC T ss_conf 999873287889989998749 No 3 >3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda} Probab=5.07 E-value=1.9e+02 Score=12.11 Aligned_cols=24 Identities=4% Similarity=0.320 Sum_probs=18.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 665334677651998875321776 Q 537021.9.peg.5 18 LISAHKKIMAITAKELSKRISISR 41 (45) Q Consensus 18 lisahkkimaitakelskrisisr 41 (45) ++..+.+-+.+|.+++++++.+|+ T Consensus 16 ~~~~~R~~~gltq~elA~~lgvs~ 39 (80) T 3kz3_A 16 IWEKKKNELGLSYESVADKMGMGQ 39 (80) T ss_dssp HHHHHHHHHTCCHHHHHHHTTSCH T ss_pred HHHHHHHHCCCCHHHHHHHHCCCH T ss_conf 999999993999999966209889 No 4 >1dt7_X Cellular tumor antigen P53; S100B, C-terminal domain of P53, calcium-binding, EF-hand, S100 protein, four helix bundle, helix loop helix; NMR {Rattus norvegicus} SCOP: j.69.1.1 Probab=4.82 E-value=1.7e+02 Score=12.36 Aligned_cols=11 Identities=55% Similarity=0.564 Sum_probs=7.7 Q ss_pred HHHHHHHHHHH Q ss_conf 65334677651 Q 537021.9.peg.5 19 ISAHKKIMAIT 29 (45) Q Consensus 19 isahkkimait 29 (45) .|.|||.|--| T Consensus 11 tsrhkklmfkt 21 (26) T 1dt7_X 11 TSRHKKLMFKT 21 (26) T ss_dssp GGHHHHHHTTC T ss_pred CCHHHHEEEEE T ss_conf 12234114520 No 5 >2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli} Probab=4.36 E-value=1.7e+02 Score=12.37 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=8.6 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 7651998875321776 Q 537021.9.peg.5 26 MAITAKELSKRISISR 41 (45) Q Consensus 26 maitakelskrisisr 41 (45) +.+|.++|++++.+|+ T Consensus 23 ~gisq~~LA~~lgvs~ 38 (113) T 2eby_A 23 LDLKINELAELLHVHR 38 (113) T ss_dssp TTCCHHHHHHHHTSCH T ss_pred CCCCHHHHHHHHCCCH T ss_conf 6999999999969899 No 6 >1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A Probab=4.36 E-value=1.7e+02 Score=12.44 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=11.5 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 7651998875321776 Q 537021.9.peg.5 26 MAITAKELSKRISISR 41 (45) Q Consensus 26 maitakelskrisisr 41 (45) -++||++|.|.+.+++ T Consensus 26 ~~~tA~~LAk~lg~~K 41 (81) T 1qbj_A 26 KATTAHDLSGKLGTPK 41 (81) T ss_dssp CCBCHHHHHHHHTCCH T ss_pred CCHHHHHHHHHHCCCH T ss_conf 7521999999969888 No 7 >1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Probab=4.32 E-value=2.2e+02 Score=11.81 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=21.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 666646766533467765199887532 Q 537021.9.peg.5 11 KALIDFSLISAHKKIMAITAKELSKRI 37 (45) Q Consensus 11 kalidfslisahkkimaitakelskri 37 (45) ..+.+.++|..|+.|..+-..|+...| T Consensus 70 ~~F~g~s~i~rHr~Vy~~L~~ei~~~i 96 (123) T 1v60_A 70 SRFEGMSPLQRHRLVHEALSEELAGPV 96 (123) T ss_dssp GGGTTCCHHHHHHHHHHHTHHHHTTTC T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCC T ss_conf 754798789999999999999974897 No 8 >1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19 Probab=3.95 E-value=2.1e+02 Score=11.93 Aligned_cols=13 Identities=46% Similarity=0.483 Sum_probs=8.3 Q ss_pred HHHHHHHHHHHHH Q ss_conf 6519988753217 Q 537021.9.peg.5 27 AITAKELSKRISI 39 (45) Q Consensus 27 aitakelskrisi 39 (45) -|||-|+|+++.| T Consensus 29 ~iTAi~Is~kL~i 41 (75) T 1sfu_A 29 YTTAISLSNRLKI 41 (75) T ss_dssp EECHHHHHHHTTC T ss_pred CCHHHHHHHHHCC T ss_conf 2219999988630 No 9 >2zvm_U DNA polymerase IOTA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, complex, PIP-BOX, transferase; HET: DNA; 2.30A {Homo sapiens} Probab=3.77 E-value=94 Score=13.68 Aligned_cols=12 Identities=50% Similarity=0.791 Sum_probs=8.5 Q ss_pred HHHHHHHHHHHH Q ss_conf 666666467665 Q 537021.9.peg.5 9 LKKALIDFSLIS 20 (45) Q Consensus 9 lkkalidfslis 20 (45) -||.|||+-|.. T Consensus 5 akkglidyylmp 16 (26) T 2zvm_U 5 AKKGLIDYYLMP 16 (26) T ss_pred CCCCCEEEEEEC T ss_conf 104403578704 No 10 >2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural genomics, NPPSFA; NMR {Escherichia coli str} Probab=3.51 E-value=2.6e+02 Score=11.43 Aligned_cols=27 Identities=22% Similarity=0.360 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 666646766533467765199887532 Q 537021.9.peg.5 11 KALIDFSLISAHKKIMAITAKELSKRI 37 (45) Q Consensus 11 kalidfslisahkkimaitakelskri 37 (45) ..+.+.++|..|+.|+..-..|+...| T Consensus 53 ~~F~g~s~i~rHR~V~~~L~~ei~~~I 79 (107) T 2dhm_A 53 DRFTGERFLNRHRMIYSTLAEELSTTV 79 (107) T ss_dssp GGGSSCCSSHHHHHHHHHTHHHHHTTC T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCC T ss_conf 753688789999999999999971797 Done!