Query         537021.9.peg.509_1
Match_columns 45
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 24 20:09:13 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_509.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1oo0_A MAGO nashi protein; RNA  10.0      48   0.002   15.2  -0.1   13   15-27    134-146 (147)
  2 2pv4_A Uncharacterized protein   8.6 1.1E+02  0.0046   13.3   1.3   21    8-28    125-145 (145)
  3 3kz3_A Repressor protein CI; f   5.1 1.9E+02  0.0081   12.1   1.6   24   18-41     16-39  (80)
  4 1dt7_X Cellular tumor antigen    4.8 1.7E+02  0.0072   12.4   0.7   11   19-29     11-21  (26)
  5 2eby_A Putative HTH-type trans   4.4 1.7E+02  0.0072   12.4   0.4   16   26-41     23-38  (113)
  6 1qbj_A Protein (double-strande   4.4 1.7E+02  0.0069   12.4   0.3   16   26-41     26-41  (81)
  7 1v60_A BOLA1, riken cDNA 18100   4.3 2.2E+02  0.0092   11.8   1.6   27   11-37     70-96  (123)
  8 1sfu_A 34L protein; protein/Z-   3.9 2.1E+02  0.0088   11.9   0.5   13   27-39     29-41  (75)
  9 2zvm_U DNA polymerase IOTA, pr   3.8      94  0.0039   13.7  -1.4   12    9-20      5-16  (26)
 10 2dhm_A Protein BOLA; stationar   3.5 2.6E+02   0.011   11.4   1.0   27   11-37     53-79  (107)

No 1  
>1oo0_A MAGO nashi protein; RNA recognition motif, splicing, protein complex, EXON junction complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.232.1.1 PDB: 1rk8_B 2x1g_B 1hl6_B 2j0s_C* 2j0q_C* 2hyi_A* 2xb2_C* 3ex7_A* 1p27_A
Probab=10.04  E-value=48  Score=15.18  Aligned_cols=13  Identities=54%  Similarity=0.572  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             4676653346776
Q 537021.9.peg.5   15 DFSLISAHKKIMA   27 (45)
Q Consensus        15 dfslisahkkima   27 (45)
                      -||||+.|-||-.
T Consensus       134 vfsLi~lHfkikP  146 (147)
T 1oo0_A          134 VFSLIGLHFKIKP  146 (147)
T ss_dssp             HHHHHHHHHTSCC
T ss_pred             HHHHHHHHCCCCC
T ss_conf             9998764011136


No 2  
>2pv4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.95A {Shewanella amazonensis SB2B} SCOP: a.286.1.1
Probab=8.58  E-value=1.1e+02  Score=13.33  Aligned_cols=21  Identities=38%  Similarity=0.515  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             366666646766533467765
Q 537021.9.peg.5    8 SLKKALIDFSLISAHKKIMAI   28 (45)
Q Consensus         8 slkkalidfslisahkkimai   28 (45)
                      -||||--|-++...-|.+|||
T Consensus       125 qLKKAR~d~~m~~~fk~V~~~  145 (145)
T 2pv4_A          125 KLKKARTDRSMYNSMREVMGI  145 (145)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHHCCCHHHHHHHHHHHCC
T ss_conf             999873287889989998749


No 3  
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=5.07  E-value=1.9e+02  Score=12.11  Aligned_cols=24  Identities=4%  Similarity=0.320  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             665334677651998875321776
Q 537021.9.peg.5   18 LISAHKKIMAITAKELSKRISISR   41 (45)
Q Consensus        18 lisahkkimaitakelskrisisr   41 (45)
                      ++..+.+-+.+|.+++++++.+|+
T Consensus        16 ~~~~~R~~~gltq~elA~~lgvs~   39 (80)
T 3kz3_A           16 IWEKKKNELGLSYESVADKMGMGQ   39 (80)
T ss_dssp             HHHHHHHHHTCCHHHHHHHTTSCH
T ss_pred             HHHHHHHHCCCCHHHHHHHHCCCH
T ss_conf             999999993999999966209889


No 4  
>1dt7_X Cellular tumor antigen P53; S100B, C-terminal domain of P53, calcium-binding, EF-hand, S100 protein, four helix bundle, helix loop helix; NMR {Rattus norvegicus} SCOP: j.69.1.1
Probab=4.82  E-value=1.7e+02  Score=12.36  Aligned_cols=11  Identities=55%  Similarity=0.564  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHH
Q ss_conf             65334677651
Q 537021.9.peg.5   19 ISAHKKIMAIT   29 (45)
Q Consensus        19 isahkkimait   29 (45)
                      .|.|||.|--|
T Consensus        11 tsrhkklmfkt   21 (26)
T 1dt7_X           11 TSRHKKLMFKT   21 (26)
T ss_dssp             GGHHHHHHTTC
T ss_pred             CCHHHHEEEEE
T ss_conf             12234114520


No 5  
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=4.36  E-value=1.7e+02  Score=12.37  Aligned_cols=16  Identities=19%  Similarity=0.486  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             7651998875321776
Q 537021.9.peg.5   26 MAITAKELSKRISISR   41 (45)
Q Consensus        26 maitakelskrisisr   41 (45)
                      +.+|.++|++++.+|+
T Consensus        23 ~gisq~~LA~~lgvs~   38 (113)
T 2eby_A           23 LDLKINELAELLHVHR   38 (113)
T ss_dssp             TTCCHHHHHHHHTSCH
T ss_pred             CCCCHHHHHHHHCCCH
T ss_conf             6999999999969899


No 6  
>1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A
Probab=4.36  E-value=1.7e+02  Score=12.44  Aligned_cols=16  Identities=31%  Similarity=0.461  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             7651998875321776
Q 537021.9.peg.5   26 MAITAKELSKRISISR   41 (45)
Q Consensus        26 maitakelskrisisr   41 (45)
                      -++||++|.|.+.+++
T Consensus        26 ~~~tA~~LAk~lg~~K   41 (81)
T 1qbj_A           26 KATTAHDLSGKLGTPK   41 (81)
T ss_dssp             CCBCHHHHHHHHTCCH
T ss_pred             CCHHHHHHHHHHCCCH
T ss_conf             7521999999969888


No 7  
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=4.32  E-value=2.2e+02  Score=11.81  Aligned_cols=27  Identities=15%  Similarity=0.263  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             666646766533467765199887532
Q 537021.9.peg.5   11 KALIDFSLISAHKKIMAITAKELSKRI   37 (45)
Q Consensus        11 kalidfslisahkkimaitakelskri   37 (45)
                      ..+.+.++|..|+.|..+-..|+...|
T Consensus        70 ~~F~g~s~i~rHr~Vy~~L~~ei~~~i   96 (123)
T 1v60_A           70 SRFEGMSPLQRHRLVHEALSEELAGPV   96 (123)
T ss_dssp             GGGTTCCHHHHHHHHHHHTHHHHTTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             754798789999999999999974897


No 8  
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=3.95  E-value=2.1e+02  Score=11.93  Aligned_cols=13  Identities=46%  Similarity=0.483  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             6519988753217
Q 537021.9.peg.5   27 AITAKELSKRISI   39 (45)
Q Consensus        27 aitakelskrisi   39 (45)
                      -|||-|+|+++.|
T Consensus        29 ~iTAi~Is~kL~i   41 (75)
T 1sfu_A           29 YTTAISLSNRLKI   41 (75)
T ss_dssp             EECHHHHHHHTTC
T ss_pred             CCHHHHHHHHHCC
T ss_conf             2219999988630


No 9  
>2zvm_U DNA polymerase IOTA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, complex, PIP-BOX, transferase; HET: DNA; 2.30A {Homo sapiens}
Probab=3.77  E-value=94  Score=13.68  Aligned_cols=12  Identities=50%  Similarity=0.791  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             666666467665
Q 537021.9.peg.5    9 LKKALIDFSLIS   20 (45)
Q Consensus         9 lkkalidfslis   20 (45)
                      -||.|||+-|..
T Consensus         5 akkglidyylmp   16 (26)
T 2zvm_U            5 AKKGLIDYYLMP   16 (26)
T ss_pred             CCCCCEEEEEEC
T ss_conf             104403578704


No 10 
>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural genomics, NPPSFA; NMR {Escherichia coli str}
Probab=3.51  E-value=2.6e+02  Score=11.43  Aligned_cols=27  Identities=22%  Similarity=0.360  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             666646766533467765199887532
Q 537021.9.peg.5   11 KALIDFSLISAHKKIMAITAKELSKRI   37 (45)
Q Consensus        11 kalidfslisahkkimaitakelskri   37 (45)
                      ..+.+.++|..|+.|+..-..|+...|
T Consensus        53 ~~F~g~s~i~rHR~V~~~L~~ei~~~I   79 (107)
T 2dhm_A           53 DRFTGERFLNRHRMIYSTLAEELSTTV   79 (107)
T ss_dssp             GGGSSCCSSHHHHHHHHHTHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             753688789999999999999971797


Done!