Query 537021.9.peg.509_1 Match_columns 45 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Tue May 24 20:54:03 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_509.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1rk8b_ d.232.1.1 (B:) Mago na 8.9 41 0.003 14.3 0.5 11 15-25 131-141 (141) 2 d1sfua_ a.4.5.19 (A:) 34L {Yab 8.4 38 0.0028 14.4 0.1 15 27-41 24-38 (70) 3 d2pv4a1 a.286.1.1 (A:1-144) Un 8.2 68 0.005 13.2 1.3 21 8-28 124-144 (144) 4 d1lmb3_ a.35.1.2 (3:) lambda C 7.2 83 0.006 12.8 1.6 24 18-41 16-39 (87) 5 d1biaa1 a.4.5.1 (A:1-63) Bioti 6.6 56 0.0041 13.6 0.3 16 27-42 19-34 (63) 6 d1j5ya1 a.4.5.1 (A:3-67) Putat 5.5 80 0.0058 12.8 0.5 15 27-41 22-36 (65) 7 d1zk8a1 a.4.1.9 (A:6-77) Trans 4.5 1.2E+02 0.0089 11.9 1.9 21 21-41 17-37 (72) 8 d1i1ga1 a.4.5.32 (A:2-61) LprA 4.0 1.3E+02 0.0098 11.7 1.3 27 15-41 5-31 (60) 9 d1u97a_ a.17.1.2 (A:) Cytochro 3.5 1.5E+02 0.011 11.4 1.2 12 17-28 49-60 (69) 10 d1wjva1 g.37.1.2 (A:1-35) Cell 3.3 87 0.0063 12.6 -0.6 14 3-16 14-27 (35) No 1 >d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=8.92 E-value=41 Score=14.29 Aligned_cols=11 Identities=64% Similarity=0.709 Sum_probs=8.2 Q ss_pred HHHHHHHHHHH Q ss_conf 46766533467 Q 537021.9.peg.5 15 DFSLISAHKKI 25 (45) Q Consensus 15 dfslisahkki 25 (45) -||||+.|-|| T Consensus 131 vfsLi~lHfkI 141 (141) T d1rk8b_ 131 VFSLIGLHFKI 141 (141) T ss_dssp HHHHHHHHTTC T ss_pred HHHHHHHHCCC T ss_conf 99997764059 No 2 >d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]} Probab=8.37 E-value=38 Score=14.45 Aligned_cols=15 Identities=40% Similarity=0.499 Sum_probs=11.6 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 651998875321776 Q 537021.9.peg.5 27 AITAKELSKRISISR 41 (45) Q Consensus 27 aitakelskrisisr 41 (45) .+||++|+|++.+++ T Consensus 24 ~~tA~~LAk~Lg~~K 38 (70) T d1sfua_ 24 YTTAISLSNRLKINK 38 (70) T ss_dssp EECHHHHHHHTTCCH T ss_pred CCHHHHHHHHHCCCH T ss_conf 704999999959889 No 3 >d2pv4a1 a.286.1.1 (A:1-144) Uncharacterized protein Sama2622 {Shewanella amazonensis [TaxId: 60478]} Probab=8.18 E-value=68 Score=13.19 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=12.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 366666646766533467765 Q 537021.9.peg.5 8 SLKKALIDFSLISAHKKIMAI 28 (45) Q Consensus 8 slkkalidfslisahkkimai 28 (45) -||||--|-++...-|.+||| T Consensus 124 qLKKAR~D~~m~~sfk~V~~~ 144 (144) T d2pv4a1 124 KLKKARTDRSMYNSMREVMGI 144 (144) T ss_dssp HHHHHTTCHHHHHHHHHHHTC T ss_pred HHHHHCCCHHHHHHHHHHHCC T ss_conf 999874288889889998749 No 4 >d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]} Probab=7.16 E-value=83 Score=12.76 Aligned_cols=24 Identities=4% Similarity=0.362 Sum_probs=18.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 665334677651998875321776 Q 537021.9.peg.5 18 LISAHKKIMAITAKELSKRISISR 41 (45) Q Consensus 18 lisahkkimaitakelskrisisr 41 (45) ++...++...+|.++|.+++.+|+ T Consensus 16 ~i~~~R~~~gltq~~lA~~lgis~ 39 (87) T d1lmb3_ 16 IYEKKKNELGLSQESVADKMGMGQ 39 (87) T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCH T ss_pred HHHHHHHHCCCCHHHHHHHHCCCH T ss_conf 999999993999999998867228 No 5 >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=6.63 E-value=56 Score=13.62 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=12.4 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 6519988753217763 Q 537021.9.peg.5 27 AITAKELSKRISISRC 42 (45) Q Consensus 27 aitakelskrisisrc 42 (45) .+++.||+++..+|+- T Consensus 19 ~~s~~eLa~~l~vS~~ 34 (63) T d1biaa1 19 FHSGEQLGETLGMSRA 34 (63) T ss_dssp CBCHHHHHHHHTSCHH T ss_pred CCCHHHHHHHHCCCHH T ss_conf 5879999999893999 No 6 >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=5.46 E-value=80 Score=12.83 Aligned_cols=15 Identities=27% Similarity=0.632 Sum_probs=11.8 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 651998875321776 Q 537021.9.peg.5 27 AITAKELSKRISISR 41 (45) Q Consensus 27 aitakelskrisisr 41 (45) .+++.||+++..+|+ T Consensus 22 ~vs~~~La~~l~VS~ 36 (65) T d1j5ya1 22 PVSGAQLAEELSVSR 36 (65) T ss_dssp CBCHHHHHHHHTSCH T ss_pred CCCHHHHHHHHCCCH T ss_conf 785999999979899 No 7 >d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]} Probab=4.54 E-value=1.2e+02 Score=11.90 Aligned_cols=21 Identities=10% Similarity=0.275 Sum_probs=13.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 334677651998875321776 Q 537021.9.peg.5 21 AHKKIMAITAKELSKRISISR 41 (45) Q Consensus 21 ahkkimaitakelskrisisr 41 (45) ..+-.-++|-++++++..+|+ T Consensus 17 ~~~G~~~~t~~~Ia~~agvs~ 37 (72) T d1zk8a1 17 DANGVQEVTLASLAQTLGVRS 37 (72) T ss_dssp HHHCGGGCCHHHHHHHHTSCH T ss_pred HHHCCCCCCHHHHHHHHCCCH T ss_conf 986977566999999959799 No 8 >d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=4.03 E-value=1.3e+02 Score=11.69 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=13.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 467665334677651998875321776 Q 537021.9.peg.5 15 DFSLISAHKKIMAITAKELSKRISISR 41 (45) Q Consensus 15 dfslisahkkimaitakelskrisisr 41 (45) |.-++..-.+=--++..|+++++.+|+ T Consensus 5 D~kIl~~L~~n~r~s~~~lA~~~gls~ 31 (60) T d1i1ga1 5 DKIILEILEKDARTPFTEIAKKLGISE 31 (60) T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCH T ss_conf 999999998849999999999989299 No 9 >d1u97a_ a.17.1.2 (A:) Cytochrome C oxidase copper chaperone, COX17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=3.49 E-value=1.5e+02 Score=11.43 Aligned_cols=12 Identities=25% Similarity=0.182 Sum_probs=9.0 Q ss_pred HHHHHHHHHHHH Q ss_conf 766533467765 Q 537021.9.peg.5 17 SLISAHKKIMAI 28 (45) Q Consensus 17 slisahkkimai 28 (45) .||.+||.-|+- T Consensus 49 ~lIeahk~CMr~ 60 (69) T d1u97a_ 49 EFIEKYKECMKG 60 (69) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999997 No 10 >d1wjva1 g.37.1.2 (A:1-35) Cell growth regulating nucleolar protein LyaR {Mouse (Mus musculus) [TaxId: 10090]} Probab=3.34 E-value=87 Score=12.64 Aligned_cols=14 Identities=43% Similarity=0.465 Sum_probs=10.7 Q ss_pred CHHHHHHHHHHHHH Q ss_conf 21322366666646 Q 537021.9.peg.5 3 NAIGISLKKALIDF 16 (45) Q Consensus 3 naigislkkalidf 16 (45) |+-|-|+||+-.+- T Consensus 14 n~CGEs~KK~qVek 27 (35) T d1wjva1 14 NACGESVKKIQVEK 27 (35) T ss_dssp SSSCCEEETTHHHH T ss_pred CHHHHHHHHHHHHH T ss_conf 51477772888999 Done!