Query         537021.9.peg.509_1
Match_columns 45
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Tue May 24 20:54:03 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_509.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1rk8b_ d.232.1.1 (B:) Mago na   8.9      41   0.003   14.3   0.5   11   15-25    131-141 (141)
  2 d1sfua_ a.4.5.19 (A:) 34L {Yab   8.4      38  0.0028   14.4   0.1   15   27-41     24-38  (70)
  3 d2pv4a1 a.286.1.1 (A:1-144) Un   8.2      68   0.005   13.2   1.3   21    8-28    124-144 (144)
  4 d1lmb3_ a.35.1.2 (3:) lambda C   7.2      83   0.006   12.8   1.6   24   18-41     16-39  (87)
  5 d1biaa1 a.4.5.1 (A:1-63) Bioti   6.6      56  0.0041   13.6   0.3   16   27-42     19-34  (63)
  6 d1j5ya1 a.4.5.1 (A:3-67) Putat   5.5      80  0.0058   12.8   0.5   15   27-41     22-36  (65)
  7 d1zk8a1 a.4.1.9 (A:6-77) Trans   4.5 1.2E+02  0.0089   11.9   1.9   21   21-41     17-37  (72)
  8 d1i1ga1 a.4.5.32 (A:2-61) LprA   4.0 1.3E+02  0.0098   11.7   1.3   27   15-41      5-31  (60)
  9 d1u97a_ a.17.1.2 (A:) Cytochro   3.5 1.5E+02   0.011   11.4   1.2   12   17-28     49-60  (69)
 10 d1wjva1 g.37.1.2 (A:1-35) Cell   3.3      87  0.0063   12.6  -0.6   14    3-16     14-27  (35)

No 1  
>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=8.92  E-value=41  Score=14.29  Aligned_cols=11  Identities=64%  Similarity=0.709  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHH
Q ss_conf             46766533467
Q 537021.9.peg.5   15 DFSLISAHKKI   25 (45)
Q Consensus        15 dfslisahkki   25 (45)
                      -||||+.|-||
T Consensus       131 vfsLi~lHfkI  141 (141)
T d1rk8b_         131 VFSLIGLHFKI  141 (141)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHCCC
T ss_conf             99997764059


No 2  
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=8.37  E-value=38  Score=14.45  Aligned_cols=15  Identities=40%  Similarity=0.499  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             651998875321776
Q 537021.9.peg.5   27 AITAKELSKRISISR   41 (45)
Q Consensus        27 aitakelskrisisr   41 (45)
                      .+||++|+|++.+++
T Consensus        24 ~~tA~~LAk~Lg~~K   38 (70)
T d1sfua_          24 YTTAISLSNRLKINK   38 (70)
T ss_dssp             EECHHHHHHHTTCCH
T ss_pred             CCHHHHHHHHHCCCH
T ss_conf             704999999959889


No 3  
>d2pv4a1 a.286.1.1 (A:1-144) Uncharacterized protein Sama2622 {Shewanella amazonensis [TaxId: 60478]}
Probab=8.18  E-value=68  Score=13.19  Aligned_cols=21  Identities=38%  Similarity=0.515  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             366666646766533467765
Q 537021.9.peg.5    8 SLKKALIDFSLISAHKKIMAI   28 (45)
Q Consensus         8 slkkalidfslisahkkimai   28 (45)
                      -||||--|-++...-|.+|||
T Consensus       124 qLKKAR~D~~m~~sfk~V~~~  144 (144)
T d2pv4a1         124 KLKKARTDRSMYNSMREVMGI  144 (144)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHHCCCHHHHHHHHHHHCC
T ss_conf             999874288889889998749


No 4  
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]}
Probab=7.16  E-value=83  Score=12.76  Aligned_cols=24  Identities=4%  Similarity=0.362  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             665334677651998875321776
Q 537021.9.peg.5   18 LISAHKKIMAITAKELSKRISISR   41 (45)
Q Consensus        18 lisahkkimaitakelskrisisr   41 (45)
                      ++...++...+|.++|.+++.+|+
T Consensus        16 ~i~~~R~~~gltq~~lA~~lgis~   39 (87)
T d1lmb3_          16 IYEKKKNELGLSQESVADKMGMGQ   39 (87)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHTSCH
T ss_pred             HHHHHHHHCCCCHHHHHHHHCCCH
T ss_conf             999999993999999998867228


No 5  
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=6.63  E-value=56  Score=13.62  Aligned_cols=16  Identities=19%  Similarity=0.395  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             6519988753217763
Q 537021.9.peg.5   27 AITAKELSKRISISRC   42 (45)
Q Consensus        27 aitakelskrisisrc   42 (45)
                      .+++.||+++..+|+-
T Consensus        19 ~~s~~eLa~~l~vS~~   34 (63)
T d1biaa1          19 FHSGEQLGETLGMSRA   34 (63)
T ss_dssp             CBCHHHHHHHHTSCHH
T ss_pred             CCCHHHHHHHHCCCHH
T ss_conf             5879999999893999


No 6  
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=5.46  E-value=80  Score=12.83  Aligned_cols=15  Identities=27%  Similarity=0.632  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             651998875321776
Q 537021.9.peg.5   27 AITAKELSKRISISR   41 (45)
Q Consensus        27 aitakelskrisisr   41 (45)
                      .+++.||+++..+|+
T Consensus        22 ~vs~~~La~~l~VS~   36 (65)
T d1j5ya1          22 PVSGAQLAEELSVSR   36 (65)
T ss_dssp             CBCHHHHHHHHTSCH
T ss_pred             CCCHHHHHHHHCCCH
T ss_conf             785999999979899


No 7  
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=4.54  E-value=1.2e+02  Score=11.90  Aligned_cols=21  Identities=10%  Similarity=0.275  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             334677651998875321776
Q 537021.9.peg.5   21 AHKKIMAITAKELSKRISISR   41 (45)
Q Consensus        21 ahkkimaitakelskrisisr   41 (45)
                      ..+-.-++|-++++++..+|+
T Consensus        17 ~~~G~~~~t~~~Ia~~agvs~   37 (72)
T d1zk8a1          17 DANGVQEVTLASLAQTLGVRS   37 (72)
T ss_dssp             HHHCGGGCCHHHHHHHHTSCH
T ss_pred             HHHCCCCCCHHHHHHHHCCCH
T ss_conf             986977566999999959799


No 8  
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=4.03  E-value=1.3e+02  Score=11.69  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             467665334677651998875321776
Q 537021.9.peg.5   15 DFSLISAHKKIMAITAKELSKRISISR   41 (45)
Q Consensus        15 dfslisahkkimaitakelskrisisr   41 (45)
                      |.-++..-.+=--++..|+++++.+|+
T Consensus         5 D~kIl~~L~~n~r~s~~~lA~~~gls~   31 (60)
T d1i1ga1           5 DKIILEILEKDARTPFTEIAKKLGISE   31 (60)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHTSCH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCCCH
T ss_conf             999999998849999999999989299


No 9  
>d1u97a_ a.17.1.2 (A:) Cytochrome C oxidase copper chaperone, COX17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.49  E-value=1.5e+02  Score=11.43  Aligned_cols=12  Identities=25%  Similarity=0.182  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             766533467765
Q 537021.9.peg.5   17 SLISAHKKIMAI   28 (45)
Q Consensus        17 slisahkkimai   28 (45)
                      .||.+||.-|+-
T Consensus        49 ~lIeahk~CMr~   60 (69)
T d1u97a_          49 EFIEKYKECMKG   60 (69)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999997


No 10 
>d1wjva1 g.37.1.2 (A:1-35) Cell growth regulating nucleolar protein LyaR {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.34  E-value=87  Score=12.64  Aligned_cols=14  Identities=43%  Similarity=0.465  Sum_probs=10.7

Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             21322366666646
Q 537021.9.peg.5    3 NAIGISLKKALIDF   16 (45)
Q Consensus         3 naigislkkalidf   16 (45)
                      |+-|-|+||+-.+-
T Consensus        14 n~CGEs~KK~qVek   27 (35)
T d1wjva1          14 NACGESVKKIQVEK   27 (35)
T ss_dssp             SSSCCEEETTHHHH
T ss_pred             CHHHHHHHHHHHHH
T ss_conf             51477772888999


Done!