RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.509_1
         (45 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.7 bits (56), Expect = 2.8
 Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 9/37 (24%)

Query: 7   ISLKKALIDFSLIS-AHK----KIMAITAKELSKRIS 38
           IS    LI   +I  AH     K++  T  EL   + 
Sbjct: 236 ISC--PLI--GVIQLAHYVVTAKLLGFTPGELRSYLK 268



 Score = 25.3 bits (55), Expect = 3.5
 Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 3/24 (12%)

Query: 24  KIMAITAKEL--SKRISISRCINA 45
             +  T   L   K++ IS  +N 
Sbjct: 351 DYVNKTNSHLPAGKQVEIS-LVNG 373


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.323    0.132    0.338 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 328,742
Number of extensions: 8864
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 4
Length of query: 45
Length of database: 5,693,230
Length adjustment: 18
Effective length of query: 27
Effective length of database: 5,256,838
Effective search space: 141934626
Effective search space used: 141934626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.2 bits)