Query 537021.9.peg.523_1
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Tue May 24 19:49:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_523.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2es9_A Putative cytoplasmic p 21.8 29 0.00086 17.7 0.6 18 2-19 5-22 (115)
2 >1qht_A Protein (DNA polymeras 12.7 53 0.0016 16.4 0.1 31 5-35 30-65 (87)
3 >3i4r_B Nuclear pore complex p 10.7 76 0.0022 15.6 0.4 32 2-34 31-63 (132)
4 >2p0v_A Hypothetical protein B 10.0 1.6E+02 0.0047 14.0 1.8 15 2-16 45-59 (187)
5 >2nvp_A Hypothetical protein; 9.7 1.5E+02 0.0046 14.0 1.7 14 2-15 43-56 (155)
6 >1eer_A Erythropoietin; signal 9.2 1.2E+02 0.0035 14.6 0.9 13 20-32 144-156 (166)
7 >2j01_7 50S ribosomal protein 9.1 1E+02 0.0031 14.9 0.6 20 18-37 4-23 (49)
8 >3i1n_2 50S ribosomal protein 8.8 1.1E+02 0.0031 14.8 0.5 20 18-37 4-23 (46)
9 >2pk8_A Uncharacterized protei 7.4 1.3E+02 0.0039 14.4 0.5 26 6-31 18-46 (103)
10 >1t5b_A Acyl carrier protein p 6.8 61 0.0018 16.0 -1.5 28 4-31 103-136 (201)
No 1
>>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Salmonella typhimurium LT2} (A:)
Probab=21.81 E-value=29 Score=17.67 Aligned_cols=18 Identities=39% Similarity=0.486 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 889999999866655311
Q 537021.9.peg.5 2 LDKLIKGVIDRALDMTGY 19 (38)
Q Consensus 2 ldklikgvidraldmtgy 19 (38)
-||-...|||.|||..|-
T Consensus 5 kdk~mPavIdKALDFIg~ 22 (115)
T 2es9_A 5 KDKSXPTAIEKALDFIGG 22 (115)
T ss_dssp ------CHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHCC
T ss_conf 447657899999987403
No 2
>>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymerase, POL alpha family polymerase, transferase; 2.10A {Thermococcus SP} (A:613-653,A:730-775)
Probab=12.67 E-value=53 Score=16.35 Aligned_cols=31 Identities=29% Similarity=0.570 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q ss_conf 999999866655311057765-----1346545666
Q 537021.9.peg.5 5 LIKGVIDRALDMTGYVPSHLL-----RGKVFGYRQK 35 (38)
Q Consensus 5 likgvidraldmtgyvpshll-----rgkvfgyrqk 35 (38)
.+|.+|.+-+.-.-|.....| --+.||||..
T Consensus 30 YVK~VIsDLl~g~~~~~~~~~~~~~~~~~~~~~~~~ 65 (87)
T 1qht_A 30 IVKEVTEKLSKYEYYIENQVLPAVERILKAFGYRKE 65 (87)
T ss_dssp HHHHTC------CHHHHTTHHHHSHHHHHTTTC---
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 999999999859999997408999999977299989
No 3
>>3i4r_B Nuclear pore complex protein NUP133; protein transport,structural protein, kinetochore, mRNA transport, nucleus, phosphoprotein, translocation; 3.53A {Homo sapiens} (B:118-249)
Probab=10.71 E-value=76 Score=15.57 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 8899999998666553110577-65134654566
Q 537021.9.peg.5 2 LDKLIKGVIDRALDMTGYVPSH-LLRGKVFGYRQ 34 (38)
Q Consensus 2 ldklikgvidraldmtgyvpsh-llrgkvfgyrq 34 (38)
+-+||.-+|++++..-+++|+. |-.-.+| ||+
T Consensus 31 ~~~LId~aI~~al~~r~~~~~~~LT~~DvF-Yre 63 (132)
T 3i4r_B 31 LSDLVNTAILIALNKREYEIPSNLTPADVF-FRE 63 (132)
T ss_dssp TTHHHHHHHHHHTTSCCCCSSCCSCCCHHH-HTT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHH-HHH
T ss_conf 349999999999976104688999712578-899
No 4
>>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} (A:84-270)
Probab=9.98 E-value=1.6e+02 Score=13.96 Aligned_cols=15 Identities=40% Similarity=0.720 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 889999999866655
Q 537021.9.peg.5 2 LDKLIKGVIDRALDM 16 (38)
Q Consensus 2 ldklikgvidraldm 16 (38)
|..||+|+|.|....
T Consensus 45 L~~Li~G~I~rQ~~~ 59 (187)
T 2p0v_A 45 LKKXLAGVINRQFKC 59 (187)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999987
No 5
>>2nvp_A Hypothetical protein; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Clostridium perfringens} (A:41-195)
Probab=9.69 E-value=1.5e+02 Score=14.02 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 88999999986665
Q 537021.9.peg.5 2 LDKLIKGVIDRALD 15 (38)
Q Consensus 2 ldklikgvidrald 15 (38)
|..||+|+|.|-..
T Consensus 43 L~~li~G~I~rQ~~ 56 (155)
T 2nvp_A 43 LKAIFTGLINRQVK 56 (155)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999998
No 6
>>1eer_A Erythropoietin; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} (A:)
Probab=9.22 E-value=1.2e+02 Score=14.59 Aligned_cols=13 Identities=54% Similarity=0.669 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 0577651346545
Q 537021.9.peg.5 20 VPSHLLRGKVFGY 32 (38)
Q Consensus 20 vpshllrgkvfgy 32 (38)
|-+++||||+-=|
T Consensus 144 v~~nfLRGKlrll 156 (166)
T 1eer_A 144 VYSNFLRGKLKLY 156 (166)
T ss_dssp HHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999986789998
No 7
>>2j01_7 50S ribosomal protein L34; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (7:)
Probab=9.15 E-value=1e+02 Score=14.87 Aligned_cols=20 Identities=25% Similarity=0.576 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHC
Q ss_conf 11057765134654566621
Q 537021.9.peg.5 18 GYVPSHLLRGKVFGYRQKVA 37 (38)
Q Consensus 18 gyvpshllrgkvfgyrqkva 37 (38)
-|-||.+-|-+.+|++...+
T Consensus 4 TyQPs~~kRkr~HGF~~Rm~ 23 (49)
T 2j01_7 4 TWQPNRRKRAKTHGFRARMR 23 (49)
T ss_dssp SCCCCHHHHHHHHSHHHHHH
T ss_pred CCCCCCEEECCHHCHHHHCC
T ss_conf 77986200200015888717
No 8
>>3i1n_2 50S ribosomal protein L34; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_2 2aw4_2 2awb_2 1vs6_2 2i2v_2 2j28_2 2i2t_2* 2qao_2* 2qba_2* 2qbc_2* 2qbe_2 2qbg_2 2qbi_2* 2qbk_2* 2qov_2 2qox_2 2qoz_2* 2qp1_2* 2rdo_2 2vhm_2 ... (2:)
Probab=8.81 E-value=1.1e+02 Score=14.85 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHC
Q ss_conf 11057765134654566621
Q 537021.9.peg.5 18 GYVPSHLLRGKVFGYRQKVA 37 (38)
Q Consensus 18 gyvpshllrgkvfgyrqkva 37 (38)
-|-||.+-|-+..|++...+
T Consensus 4 TyQPs~~kRkr~HGF~~Rm~ 23 (46)
T 3i1n_2 4 TFQPSVLKRNRSHGFRARMA 23 (46)
T ss_dssp SCCCCHHHHHHHSSHHHHTT
T ss_pred CCCCCCCEECCCCCHHHHCC
T ss_conf 76885211321004788706
No 9
>>2pk8_A Uncharacterized protein PF0899; structural genomics, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} (A:)
Probab=7.35 E-value=1.3e+02 Score=14.36 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=20.6
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHH
Q ss_conf 99999866---655311057765134654
Q 537021.9.peg.5 6 IKGVIDRA---LDMTGYVPSHLLRGKVFG 31 (38)
Q Consensus 6 ikgvidra---ldmtgyvpshllrgkvfg 31 (38)
|.+.|+++ |.|.||-|.-+|-|+-|.
T Consensus 18 Il~~iEekinELk~dG~ePDiiL~G~eay 46 (103)
T 2pk8_A 18 ILGEIEEKMNELKMDGFNPDIILFGREAY 46 (103)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEEECHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECHHHH
T ss_conf 99999999999986589987799858999
No 10
>>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} (A:)
Probab=6.79 E-value=61 Score=16.05 Aligned_cols=28 Identities=25% Similarity=0.184 Sum_probs=18.0
Q ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Q ss_conf 99999998666------55311057765134654
Q 537021.9.peg.5 4 KLIKGVIDRAL------DMTGYVPSHLLRGKVFG 31 (38)
Q Consensus 4 klikgvidral------dmtgyvpshllrgkvfg 31 (38)
-..|+.|||.. ..++.-+...++||+++
T Consensus 103 ~~lK~~lDr~~~~~~~~~~~~~~~~~~~~gK~~~ 136 (201)
T 1t5b_A 103 TQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAV 136 (201)
T ss_dssp HHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEE
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 8999999863047842136898765754551699
Done!