Query 537021.9.peg.523_1
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 24 21:00:44 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_523.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2es9_A Putative cytoplasmic pr 21.0 22 0.00091 17.5 0.6 18 2-19 5-22 (115)
2 1v7m_V Thrombopoietin; FAB fra 9.5 69 0.0029 15.0 0.6 10 21-30 131-140 (163)
3 1eer_A Erythropoietin; signal 8.9 87 0.0037 14.5 0.9 13 20-32 144-156 (166)
4 2ftc_Q L34MT, MRP-L34, 39S rib 8.9 82 0.0035 14.6 0.8 18 19-36 1-18 (38)
5 3flo_B DNA polymerase alpha ca 7.6 1.5E+02 0.0062 13.3 1.6 27 4-32 177-203 (206)
6 1k8t_A Calmodulin-sensitive ad 7.0 1.5E+02 0.0061 13.4 1.3 18 11-28 9-26 (510)
7 1vpu_A VPU protein, VPU(39-81) 7.0 1.6E+02 0.0066 13.2 1.5 15 2-16 3-17 (45)
8 1xfx_A Calmodulin-sensitive ad 6.6 1.6E+02 0.0066 13.2 1.4 18 11-28 276-293 (777)
9 2j01_7 50S ribosomal protein L 5.2 1.5E+02 0.0063 13.3 0.6 19 18-36 4-22 (49)
10 3ofq_2 50S ribosomal protein L 5.1 1.4E+02 0.0057 13.5 0.3 20 18-37 4-23 (46)
No 1
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Salmonella typhimurium LT2} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=20.96 E-value=22 Score=17.53 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 889999999866655311
Q 537021.9.peg.5 2 LDKLIKGVIDRALDMTGY 19 (38)
Q Consensus 2 ldklikgvidraldmtgy 19 (38)
-||-...|||.|||..|-
T Consensus 5 kdk~MPavIdKALDFIg~ 22 (115)
T 2es9_A 5 KDKSMPTAIEKALDFIGG 22 (115)
T ss_dssp ------CHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHCC
T ss_conf 447657899999987403
No 2
>1v7m_V Thrombopoietin; FAB fragment, complex (cytokine/antibody), immune system/cytokine complex; 2.51A {Homo sapiens} SCOP: a.26.1.2 PDB: 1v7n_V
Probab=9.47 E-value=69 Score=15.02 Aligned_cols=10 Identities=70% Similarity=0.836 Sum_probs=6.5
Q ss_pred HHHHHHHHHH
Q ss_conf 5776513465
Q 537021.9.peg.5 21 PSHLLRGKVF 30 (38)
Q Consensus 21 pshllrgkvf 30 (38)
-+++||||+-
T Consensus 131 y~nfLRGKlr 140 (163)
T 1v7m_V 131 FQHLLRGKVR 140 (163)
T ss_dssp HHHHHHTTTG
T ss_pred HHHHHHHHHH
T ss_conf 9999756685
No 3
>1eer_A Erythropoietin; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: a.26.1.2 PDB: 1buy_A 1cn4_C
Probab=8.91 E-value=87 Score=14.49 Aligned_cols=13 Identities=54% Similarity=0.669 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 0577651346545
Q 537021.9.peg.5 20 VPSHLLRGKVFGY 32 (38)
Q Consensus 20 vpshllrgkvfgy 32 (38)
+-+++||||+-=|
T Consensus 144 v~~nfLRGKvrll 156 (166)
T 1eer_A 144 VYSNFLRGKLKLY 156 (166)
T ss_dssp HHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999986789999
No 4
>2ftc_Q L34MT, MRP-L34, 39S ribosomal protein L34, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus}
Probab=8.85 E-value=82 Score=14.62 Aligned_cols=18 Identities=28% Similarity=0.654 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 105776513465456662
Q 537021.9.peg.5 19 YVPSHLLRGKVFGYRQKV 36 (38)
Q Consensus 19 yvpshllrgkvfgyrqkv 36 (38)
|-||.+-|-..+|++...
T Consensus 1 yQPS~~kRKr~hGf~~R~ 18 (38)
T 2ftc_Q 1 YQPSNIKRKNKHGWVRRL 18 (38)
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 997412455434078883
No 5
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc-binding motif, DNA replication; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=7.61 E-value=1.5e+02 Score=13.33 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998666553110577651346545
Q 537021.9.peg.5 4 KLIKGVIDRALDMTGYVPSHLLRGKVFGY 32 (38)
Q Consensus 4 klikgvidraldmtgyvpshllrgkvfgy 32 (38)
..+++++|+-|++-||---.| ++.|++
T Consensus 177 ~~lk~~Vdk~L~~~gy~~V~L--~~LF~f 203 (206)
T 3flo_B 177 ETGRSVVQKYLNDCGRRYVDM--TSIFDF 203 (206)
T ss_dssp HHHHHHHHHHHTTC---------------
T ss_pred HHHHHHHHHHHHHCCCCEEEH--HHHHHH
T ss_conf 999999999999759888708--999899
No 6
>1k8t_A Calmodulin-sensitive adenylate cyclase; edema factor, adenylyl cyclase, anthrax, toxin, lyase; 2.60A {Bacillus anthracis} SCOP: e.41.1.1 PDB: 1k90_A* 1k93_A 1lvc_A* 1s26_A* 1sk6_A* 1pk0_A*
Probab=6.99 E-value=1.5e+02 Score=13.38 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 866655311057765134
Q 537021.9.peg.5 11 DRALDMTGYVPSHLLRGK 28 (38)
Q Consensus 11 draldmtgyvpshllrgk 28 (38)
|+|+.-+|-||+|+..=+
T Consensus 9 ~~Aik~sGIv~~Hl~~~~ 26 (510)
T 1k8t_A 9 EKALKASGLVPEHADAFK 26 (510)
T ss_dssp HHHHHHHCCCHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHH
T ss_conf 345431499889999999
No 7
>1vpu_A VPU protein, VPU(39-81); HIV, AIDS; NMR {Human immunodeficiency virus 1} SCOP: g.34.1.1 PDB: 2k7y_A
Probab=6.97 E-value=1.6e+02 Score=13.22 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 889999999866655
Q 537021.9.peg.5 2 LDKLIKGVIDRALDM 16 (38)
Q Consensus 2 ldklikgvidraldm 16 (38)
.|+||+-..+||-|-
T Consensus 3 IdrLi~RIreRAEDS 17 (45)
T 1vpu_A 3 IDRLIDRITERAEDS 17 (45)
T ss_dssp HHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 899999999860257
No 8
>1xfx_A Calmodulin-sensitive adenylate cyclase; protein-protein interaction, lyase/metal binding protein complex; 3.20A {Bacillus anthracis} PDB: 1xfw_A* 1xfv_A 1xfy_A 1xfz_A 1y0v_A 1xfu_A
Probab=6.62 E-value=1.6e+02 Score=13.21 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 866655311057765134
Q 537021.9.peg.5 11 DRALDMTGYVPSHLLRGK 28 (38)
Q Consensus 11 draldmtgyvpshllrgk 28 (38)
++|+.-||-||+|+.+=+
T Consensus 276 ~~Ai~~SGIvpeHl~~fq 293 (777)
T 1xfx_A 276 EKALKASGLVPEHADAFK 293 (777)
T ss_dssp HHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHH
T ss_conf 455550499889999999
No 9
>2j01_7 50S ribosomal protein L34; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: j.118.1.1 PDB: 1vsp_Z 2hgj_6 2hgq_6 2hgu_6 1vsa_Z 2j03_7 2jl6_7 2jl8_7 2v47_7 2v49_7 2wdi_7 2wdj_7 2wdl_7 2wdn_7 2wh2_7 2wh4_7 2wrj_7 2wrl_7 2wro_7 2wrr_7 ...
Probab=5.24 E-value=1.5e+02 Score=13.30 Aligned_cols=19 Identities=26% Similarity=0.616 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 1105776513465456662
Q 537021.9.peg.5 18 GYVPSHLLRGKVFGYRQKV 36 (38)
Q Consensus 18 gyvpshllrgkvfgyrqkv 36 (38)
-|-||.+-|-...|++...
T Consensus 4 TyqPs~~kRkr~HGFr~Rm 22 (49)
T 2j01_7 4 TWQPNRRKRAKTHGFRARM 22 (49)
T ss_dssp SCCCCHHHHHHHHSHHHHH
T ss_pred CCCCCCCEECHHHCHHHHC
T ss_conf 7688632010000468770
No 10
>3ofq_2 50S ribosomal protein L34; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1vs8_2 1vs6_2 2aw4_2 2awb_2 1vt2_2 2i2v_2 2j28_2 2i2t_2* 2qao_2* 2qba_2* 2qbc_2* 2qbe_2 2qbg_2 2qbi_2* 2qbk_2* 2qov_2 2qox_2 2qoz_2* 2qp1_2* 2rdo_2 ...
Probab=5.09 E-value=1.4e+02 Score=13.52 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHC
Q ss_conf 11057765134654566621
Q 537021.9.peg.5 18 GYVPSHLLRGKVFGYRQKVA 37 (38)
Q Consensus 18 gyvpshllrgkvfgyrqkva 37 (38)
-|-||.+-|-...|++...+
T Consensus 4 TyqPs~~kRkr~HGFr~Rm~ 23 (46)
T 3ofq_2 4 TFQPSVLKRNRSHGFRARMA 23 (46)
T ss_dssp SCCCCHHHHTTTTSHHHHSS
T ss_pred CCCCCCCEECCCCCHHHHCC
T ss_conf 77886312421005787705
Done!