RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.523_1
         (38 letters)



>gnl|CDD|37356 KOG2145, KOG2145, KOG2145, Cytoplasmic tryptophanyl-tRNA
          synthetase [Translation, ribosomal structure and
          biogenesis].
          Length = 397

 Score = 24.1 bits (52), Expect = 7.8
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 4  KLIKGVIDRALDMTGYVPSHLLR-GKVFGYR 33
          K+ + +IDR   +TG  P H LR G  F +R
Sbjct: 41 KIDEELIDRFEKLTGKPPHHFLRRGIFFSHR 71


>gnl|CDD|146928 pfam04532, DUF587, Protein of unknown function (DUF587).  This
           family consists of the N termini of some human
           herpesvirus U58 proteins, and some cytomegalovirus UL87
           proteins. This region is always found N terminal to the
           Pfam family UL87 (pfam03043), which has no known
           function.
          Length = 215

 Score = 24.3 bits (53), Expect = 8.0
 Identities = 5/12 (41%), Positives = 8/12 (66%)

Query: 16  MTGYVPSHLLRG 27
           MT +  +H+ RG
Sbjct: 137 MTNHYATHVFRG 148


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.327    0.145    0.417 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 458,477
Number of extensions: 12202
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 4
Length of query: 38
Length of database: 6,263,737
Length adjustment: 12
Effective length of query: 26
Effective length of database: 6,004,429
Effective search space: 156115154
Effective search space used: 156115154
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)