Query 537021.9.peg.532_1
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Tue May 24 19:59:37 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_532.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rzhh2 f.23.10.1 (H:11-35) Ph 41.1 7.9 0.00058 17.6 2.4 18 15-32 9-26 (26)
2 d1eysh2 f.23.10.1 (H:7-43) Pho 22.9 23 0.0017 15.3 2.3 17 15-31 12-28 (37)
3 d2baia1 g.87.1.1 (A:1-32) Poly 12.6 17 0.0012 16.0 -0.4 10 25-34 23-32 (32)
4 d2rh3a1 a.43.1.10 (A:82-202) V 6.0 93 0.0068 12.4 1.1 16 1-16 31-46 (121)
5 d2p8ia1 d.58.55.1 (A:1-115) Pu 2.9 1.7E+02 0.012 11.1 1.9 20 18-38 67-86 (115)
6 d1x58a1 a.4.1.1 (A:8-56) Hypot 2.9 1.7E+02 0.013 11.0 0.5 8 12-19 23-30 (49)
7 d1smxa_ b.40.4.5 (A:) S1-domai 2.7 1.6E+02 0.012 11.1 0.2 7 30-36 26-32 (87)
8 d1pj3a2 c.58.1.3 (A:21-279) Mi 2.3 60 0.0044 13.3 -2.4 8 8-15 230-237 (259)
9 d2iu5a2 a.121.1.1 (A:72-180) T 2.3 2.1E+02 0.015 10.6 2.3 15 9-23 37-51 (109)
10 d1xrda1 f.3.1.1 (A:1-52) Light 2.2 2.1E+02 0.016 10.6 1.5 18 1-18 24-41 (52)
No 1
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=41.15 E-value=7.9 Score=17.60 Aligned_cols=18 Identities=39% Similarity=0.805 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHCC
Q ss_conf 999999999998874447
Q 537021.9.peg.5 15 FLWIFIIVQSFYLQQRNG 32 (38)
Q Consensus 15 flwifiivqsfylqqrng 32 (38)
..|+|.-.--||+|..|.
T Consensus 9 ~fw~ffalli~ylqten~ 26 (26)
T d1rzhh2 9 SFWIFLAGLIYYLQTENX 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 999999999999850469
No 2
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=22.88 E-value=23 Score=15.33 Aligned_cols=17 Identities=24% Similarity=0.733 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 99999999999887444
Q 537021.9.peg.5 15 FLWIFIIVQSFYLQQRN 31 (38)
Q Consensus 15 flwifiivqsfylqqrn 31 (38)
-.|+|..---+|||..|
T Consensus 12 ~Fw~FFagLi~YL~rE~ 28 (37)
T d1eysh2 12 AFWLFFFGLIIYLRRED 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999997235
No 3
>d2baia1 g.87.1.1 (A:1-32) Polyprotein leader polypeptide {Mengo encephalomyocarditis virus [TaxId: 12107]}
Probab=12.64 E-value=17 Score=15.98 Aligned_cols=10 Identities=60% Similarity=0.737 Sum_probs=7.2
Q ss_pred HHHHHHCCEE
Q ss_conf 9887444724
Q 537021.9.peg.5 25 FYLQQRNGFL 34 (38)
Q Consensus 25 fylqqrngfl 34 (38)
--||-||||.
T Consensus 23 salqyrngfy 32 (32)
T d2baia1 23 SALQYRNGFY 32 (32)
T ss_dssp HCSSSTTCCC
T ss_pred HHHHHHCCCC
T ss_conf 5777522679
No 4
>d2rh3a1 a.43.1.10 (A:82-202) VirC2 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=6.03 E-value=93 Score=12.35 Aligned_cols=16 Identities=44% Similarity=0.690 Sum_probs=12.2
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 9266622866356899
Q 537021.9.peg.5 1 LQLIIRLCLLQWETFL 16 (38)
Q Consensus 1 lqliirlcllqwetfl 16 (38)
||+|.|-.|-.+|..|
T Consensus 31 LQmILRRAL~Dfe~ML 46 (121)
T d2rh3a1 31 LQMILRRALGDFENML 46 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999998999997
No 5
>d2p8ia1 d.58.55.1 (A:1-115) Putative dioxygenase BxeB0224 {Burkholderia xenovorans [TaxId: 36873]}
Probab=2.95 E-value=1.7e+02 Score=11.05 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHCCEEEEEC
Q ss_conf 999999998874447242329
Q 537021.9.peg.5 18 IFIIVQSFYLQQRNGFLSILI 38 (38)
Q Consensus 18 ifiivqsfylqqrngflsili 38 (38)
.|..+-++..+.|+ =|||||
T Consensus 67 ~F~~vv~WL~~nRg-~LsVli 86 (115)
T d2p8ia1 67 QFADLVGWLTLNHG-ALDIFL 86 (115)
T ss_dssp HHHHHHHHHHHHCT-TCCEEE
T ss_pred HHHHHHHHHHHHCC-CCEEEE
T ss_conf 99999999998379-954997
No 6
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.86 E-value=1.7e+02 Score=11.00 Aligned_cols=8 Identities=50% Similarity=1.705 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q ss_conf 56899999
Q 537021.9.peg.5 12 WETFLWIF 19 (38)
Q Consensus 12 wetflwif 19 (38)
|.+.||-|
T Consensus 23 WNsILWs~ 30 (49)
T d1x58a1 23 WNSILWSF 30 (49)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHCC
T ss_conf 66664206
No 7
>d1smxa_ b.40.4.5 (A:) S1-domain of Ribonuclease E {Escherichia coli [TaxId: 562]}
Probab=2.71 E-value=1.6e+02 Score=11.15 Aligned_cols=7 Identities=57% Similarity=1.270 Sum_probs=0.0
Q ss_pred HCCEEEE
Q ss_conf 4472423
Q 537021.9.peg.5 30 RNGFLSI 36 (38)
Q Consensus 30 rngflsi 36 (38)
|||||++
T Consensus 26 k~gFL~~ 32 (87)
T d1smxa_ 26 RHGFLPL 32 (87)
T ss_dssp SCEEEEG
T ss_pred CCCEEEE
T ss_conf 6441570
No 8
>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.34 E-value=60 Score=13.29 Aligned_cols=8 Identities=50% Similarity=0.966 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q ss_conf 86635689
Q 537021.9.peg.5 8 CLLQWETF 15 (38)
Q Consensus 8 cllqwetf 15 (38)
|++|||.|
T Consensus 230 ~li~~EDf 237 (259)
T d1pj3a2 230 TLIQFEDF 237 (259)
T ss_dssp CEEEECSC
T ss_pred CEEEHHHC
T ss_conf 68841535
No 9
>d2iu5a2 a.121.1.1 (A:72-180) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=2.32 E-value=2.1e+02 Score=10.64 Aligned_cols=15 Identities=47% Similarity=0.698 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 663568999999999
Q 537021.9.peg.5 9 LLQWETFLWIFIIVQ 23 (38)
Q Consensus 9 llqwetflwifiivq 23 (38)
|.|||..|=-.|.-|
T Consensus 37 liqwenlldkvifdq 51 (109)
T d2iu5a2 37 LIQWENLLDKVIFDQ 51 (109)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 665987888886340
No 10
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=2.22 E-value=2.1e+02 Score=10.56 Aligned_cols=18 Identities=44% Similarity=0.837 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 926662286635689999
Q 537021.9.peg.5 1 LQLIIRLCLLQWETFLWI 18 (38)
Q Consensus 1 lqliirlcllqwetflwi 18 (38)
|.+.|..-||.-+.|-|+
T Consensus 24 LAl~IHfiLLSt~rfNWl 41 (52)
T d1xrda1 24 LALLIHFILLSTERFNWL 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCC
T ss_conf 999999998546765654
Done!