BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.532_1
         (38 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.532_1 
          Length = 38

 Score = 72.0 bits (175), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/38 (100%), Positives = 38/38 (100%)

Query: 1  LQLIIRLCLLQWETFLWIFIIVQSFYLQQRNGFLSILI 38
          LQLIIRLCLLQWETFLWIFIIVQSFYLQQRNGFLSILI
Sbjct: 1  LQLIIRLCLLQWETFLWIFIIVQSFYLQQRNGFLSILI 38


>gi|254781093|ref|YP_003065506.1| hypothetical protein CLIBASIA_04975 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 225

 Score = 23.5 bits (49), Expect = 0.64,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 20 IIVQSFYLQQRNGFLSI 36
          I+ Q FYL Q+ GF+S+
Sbjct: 45 IVYQLFYLFQQRGFVSL 61


>gi|254781013|ref|YP_003065426.1| phage-associated protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 302

 Score = 20.4 bits (41), Expect = 6.2,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)

Query: 12  WETFLWIFIIVQSFYLQQ 29
           W T +WI IIV +F L Q
Sbjct: 240 WVTIVWITIIV-AFLLTQ 256


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.343    0.154    0.514 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,464
Number of Sequences: 1233
Number of extensions: 446
Number of successful extensions: 5
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 38
length of database: 328,796
effective HSP length: 12
effective length of query: 26
effective length of database: 314,000
effective search space:  8164000
effective search space used:  8164000
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 31 (16.5 bits)