Query         537021.9.peg.54_1
Match_columns 64
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 39220
Date          Mon May 23 04:35:33 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_54.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG0303 consensus               30.7      13 0.00032   18.7  -0.2   31   12-42    175-211 (472)
  2 KOG0278 consensus               20.3      61  0.0015   15.2   1.6   35   27-61    166-201 (334)
  3 KOG4001 consensus               17.4      67  0.0017   14.9   1.3   17   14-30    140-156 (259)
  4 KOG0279 consensus               17.1      68  0.0017   14.9   1.3   35   14-48    237-276 (315)
  5 KOG0283 consensus               16.3      60  0.0015   15.2   0.8   15   20-34    426-440 (712)
  6 COG4456 VagC Virulence-associa  15.6   1E+02  0.0026   14.1   1.9   30   32-62      8-39  (74)
  7 pfam03146 NtA Agrin NtA domain  14.8      84  0.0021   14.4   1.3   13   21-33     32-44  (128)
  8 cd03739 SOCS_SOCS5 SOCS (suppr  14.5 1.1E+02  0.0027   13.9   1.8   23   34-56     31-53  (57)
  9 pfam11518 DUF3221 Protein of u  12.8 1.3E+02  0.0032   13.5   2.5   28   19-52     70-98  (99)
 10 TIGR00759 aceE 2-oxo-acid dehy  11.8      33 0.00085   16.5  -1.5   33   25-57    540-577 (905)

No 1  
>KOG0303 consensus
Probab=30.72  E-value=13  Score=18.71  Aligned_cols=31  Identities=32%  Similarity=0.601  Sum_probs=21.6

Q ss_pred             HHHHHHHHHCCEEEE------EEEEEECHHHHHHHHC
Q ss_conf             442078640360488------8898612137788630
Q 537021.9.peg.5   12 LYMSLSFLKKGLLCC------KIRIWNQRSQTILKSY   42 (64)
Q Consensus        12 lymslsflkkgllcc------kiriwnqrsqtilksy   42 (64)
                      .-.|.||-..|-+-|      |||||+.|..+++..-
T Consensus       175 ~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~  211 (472)
T KOG0303         175 MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG  211 (472)
T ss_pred             EEEEEEECCCCCEEEEECCCCEEEEECCCCCCEEEEC
T ss_conf             5999896268765654025541587758887275552


No 2  
>KOG0278 consensus
Probab=20.33  E-value=61  Score=15.19  Aligned_cols=35  Identities=26%  Similarity=0.673  Sum_probs=24.2

Q ss_pred             EEEEEECHHHHHHHHCCCCE-EEEEEEEECCCEEEE
Q ss_conf             88986121377886302001-468999832857999
Q 537021.9.peg.5   27 KIRIWNQRSQTILKSYRYKQ-VCKIQIIQEGSALLL   61 (64)
Q Consensus        27 kiriwnqrsqtilksyrykq-vckiqiiqegsalll   61 (64)
                      .+|.|..|+-|+.+|...+. |--..+.|+|.-+..
T Consensus       166 tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTi  201 (334)
T KOG0278         166 TVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTI  201 (334)
T ss_pred             CEEEEEECCCCEEEEEECCCCCCEEEECCCCCEEEE
T ss_conf             368787216837877764899861466258978999


No 3  
>KOG4001 consensus
Probab=17.39  E-value=67  Score=14.95  Aligned_cols=17  Identities=35%  Similarity=0.638  Sum_probs=14.1

Q ss_pred             HHHHHHHCCEEEEEEEE
Q ss_conf             20786403604888898
Q 537021.9.peg.5   14 MSLSFLKKGLLCCKIRI   30 (64)
Q Consensus        14 mslsflkkgllcckiri   30 (64)
                      .|.|-...|++||.+|-
T Consensus       140 vs~scveRGlll~rvRD  156 (259)
T KOG4001         140 VSVSCVERGLLLVRVRD  156 (259)
T ss_pred             CCHHHHHCCEEEEEEHH
T ss_conf             26417751503788618


No 4  
>KOG0279 consensus
Probab=17.07  E-value=68  Score=14.93  Aligned_cols=35  Identities=23%  Similarity=0.547  Sum_probs=24.7

Q ss_pred             HHHHHHHCCEEEE-----EEEEEECHHHHHHHHCCCCEEE
Q ss_conf             2078640360488-----8898612137788630200146
Q 537021.9.peg.5   14 MSLSFLKKGLLCC-----KIRIWNQRSQTILKSYRYKQVC   48 (64)
Q Consensus        14 mslsflkkgllcc-----kiriwnqrsqtilksyrykqvc   48 (64)
                      -|+.|....+--|     -|+||++.++.++.+++-+-+-
T Consensus       237 ~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g  276 (315)
T KOG0279         237 NSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIG  276 (315)
T ss_pred             EEEEECCCCEEEEECCCCCEEEEECCCHHHHHHCCCCCCC
T ss_conf             6688559820576515771599963651201200302224


No 5  
>KOG0283 consensus
Probab=16.28  E-value=60  Score=15.22  Aligned_cols=15  Identities=33%  Similarity=0.625  Sum_probs=9.8

Q ss_pred             HCCEEEEEEEEEECH
Q ss_conf             036048888986121
Q 537021.9.peg.5   20 KKGLLCCKIRIWNQR   34 (64)
Q Consensus        20 kkgllcckiriwnqr   34 (64)
                      --|-|-||+|||+--
T Consensus       426 iSGSLD~KvRiWsI~  440 (712)
T KOG0283         426 ISGSLDGKVRLWSIS  440 (712)
T ss_pred             EECCCCCCEEEEECC
T ss_conf             522555416886058


No 6  
>COG4456 VagC Virulence-associated protein and related proteins [Function unknown]
Probab=15.57  E-value=1e+02  Score=14.05  Aligned_cols=30  Identities=33%  Similarity=0.672  Sum_probs=22.6

Q ss_pred             ECHHH--HHHHHCCCCEEEEEEEEECCCEEEEE
Q ss_conf             12137--78863020014689998328579999
Q 537021.9.peg.5   32 NQRSQ--TILKSYRYKQVCKIQIIQEGSALLLF   62 (64)
Q Consensus        32 nqrsq--tilksyrykqvckiqiiqegsalllf   62 (64)
                      +.|||  .+-+..|+.. -+..|+.+|+.+.+-
T Consensus         8 snrSQAVRLP~e~~f~~-~~VeI~r~G~~lII~   39 (74)
T COG4456           8 SNRSQAVRLPKEFRFPE-DRVEIIREGDRLIIE   39 (74)
T ss_pred             CCCEEEEECCHHEECCC-CEEEEEEECCEEEEE
T ss_conf             49710276544210278-589999958958998


No 7  
>pfam03146 NtA Agrin NtA domain. Agrin is a multidomain heparan sulphate proteoglycan, that is a key organiser for the induction of postsynaptic specialisations at the neuromuscular junction. Binding of agrin to basement membranes requires the amino terminal (NtA) domain. This region mediates high affinity interaction with the coiled-coil domain of laminins. The binding of agrin to laminins via the NtA domain is subject to tissue-specific regulation. The NtA domain-containing form of agrin is expressed in non-neuronal cells or in neurons that project to non-neuronal cell such as motor neurons. The structure of this domain is an OB-fold.
Probab=14.79  E-value=84  Score=14.45  Aligned_cols=13  Identities=31%  Similarity=0.956  Sum_probs=9.9

Q ss_pred             CCEEEEEEEEEEC
Q ss_conf             3604888898612
Q 537021.9.peg.5   21 KGLLCCKIRIWNQ   33 (64)
Q Consensus        21 kgllcckiriwnq   33 (64)
                      .+-.-||+|+|.-
T Consensus        32 ~~tY~ckVrVWR~   44 (128)
T pfam03146        32 QHTYSCKVRVWRY   44 (128)
T ss_pred             CCEEEEEEEEEEE
T ss_conf             6637677899998


No 8  
>cd03739 SOCS_SOCS5 SOCS (suppressors of cytokine signaling) box of SOCS5-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS5 inhibits Th2 differentiation by inhibiting IL-4 signaling. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system.   The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=14.54  E-value=1.1e+02  Score=13.91  Aligned_cols=23  Identities=30%  Similarity=0.541  Sum_probs=17.1

Q ss_pred             HHHHHHHHCCCCEEEEEEEEECC
Q ss_conf             13778863020014689998328
Q 537021.9.peg.5   34 RSQTILKSYRYKQVCKIQIIQEG   56 (64)
Q Consensus        34 rsqtilksyrykqvckiqiiqeg   56 (64)
                      .-+.-||.|.|||-..+.-+..+
T Consensus        31 ~Lk~yLkEYHYKqrVRvR~~d~e   53 (57)
T cd03739          31 MLQDFLKEYHYKQKVRVRWLERE   53 (57)
T ss_pred             HHHHHHHHHHHHCEEEEEECCCC
T ss_conf             99999999765502455533556


No 9  
>pfam11518 DUF3221 Protein of unknown function (DUF3221). This family of proteins with unknown function appears to be restricted to Bacillus. Some members in this family of proteins are annotated as YobA however this cannot be confirmed. YobA is a protein with unknown function.
Probab=12.81  E-value=1.3e+02  Score=13.51  Aligned_cols=28  Identities=43%  Similarity=0.735  Sum_probs=18.4

Q ss_pred             HHCCEEEEEEEEEECHHHHHHHHCCCCE-EEEEEE
Q ss_conf             4036048888986121377886302001-468999
Q 537021.9.peg.5   19 LKKGLLCCKIRIWNQRSQTILKSYRYKQ-VCKIQI   52 (64)
Q Consensus        19 lkkgllcckiriwnqrsqtilksyrykq-vckiqi   52 (64)
                      ||.|   -||++|   +..||.||.-|- |-|+.+
T Consensus        70 Lk~G---~KIKVW---~s~ilESyPak~~v~KfEi   98 (99)
T pfam11518        70 LKVG---QKIKVW---YSQLLESYPAKMIVEKFEV   98 (99)
T ss_pred             HHCC---CEEEEE---HHHHHCCCCCCEEEEEEEE
T ss_conf             3058---779983---1322133887407898886


No 10 
>TIGR00759 aceE 2-oxo-acid dehydrogenase E1 component, homodimeric type; InterPro: IPR004660   Most members of this family are pyruvate dehydrogenase complex, E1 component. It includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogenase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of Escherichia coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. ; GO: 0016491 oxidoreductase activity.
Probab=11.77  E-value=33  Score=16.54  Aligned_cols=33  Identities=30%  Similarity=0.368  Sum_probs=22.9

Q ss_pred             EEEEEEEECHHHHHHHH-----CCCCEEEEEEEEECCC
Q ss_conf             88889861213778863-----0200146899983285
Q 537021.9.peg.5   25 CCKIRIWNQRSQTILKS-----YRYKQVCKIQIIQEGS   57 (64)
Q Consensus        25 cckiriwnqrsqtilks-----yrykqvckiqiiqegs   57 (64)
                      --.|.|||++-|+-.-+     --||.--+=||.|||-
T Consensus       540 FrqiGIYsp~GQ~Y~P~D~~~l~~YkEs~~GQ~L~EGI  577 (905)
T TIGR00759       540 FRQIGIYSPNGQKYTPEDADSLLAYKESKDGQILQEGI  577 (905)
T ss_pred             CCCCCEECCCCCEEECCCHHHHHHHHHHCCCCCHHHHH
T ss_conf             37453057898745103433467764502685413105


Done!