Query 537021.9.peg.54_1
Match_columns 64
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Sun May 22 22:03:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_54.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jqo_A Hypothetical protein YO 24.3 17 0.00073 16.9 0.6 32 19-56 71-103 (108)
2 1s12_A Hypothetical protein TM 22.7 35 0.0015 15.3 1.9 38 20-57 48-94 (94)
3 3mi9_C Protein TAT; P-TEFB, HI 8.2 86 0.0036 13.3 0.7 18 9-26 28-46 (86)
4 3gre_A Serine/threonine-protei 6.9 1.3E+02 0.0054 12.3 1.1 22 27-48 237-258 (437)
5 2e2s_A Agelenin; cystine knot, 6.1 1.2E+02 0.005 12.5 0.5 14 21-34 20-33 (36)
6 1hym_B CMTI-V, hydrolyzed cucu 4.8 1.4E+02 0.0057 12.2 0.2 11 24-34 3-13 (26)
7 2g0i_A Hypothetical protein SM 4.6 1.9E+02 0.008 11.5 1.3 35 21-55 98-145 (145)
8 1tac_A TAT protein; transcript 4.5 1.3E+02 0.0054 12.4 -0.2 10 15-24 35-44 (86)
9 1g1p_A Conotoxin EVIA; three d 4.4 81 0.0034 13.4 -1.2 14 12-25 8-21 (33)
10 3f7f_A Nucleoporin NUP120; nuc 4.3 1.2E+02 0.005 12.5 -0.5 18 25-42 240-257 (729)
No 1
>2jqo_A Hypothetical protein YOBA; OB-fold, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis}
Probab=24.26 E-value=17 Score=16.89 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=23.4
Q ss_pred HHCCEEEEEEEEEECHHHHHHHHCCCCE-EEEEEEEECC
Q ss_conf 4036048888986121377886302001-4689998328
Q 537021.9.peg.5 19 LKKGLLCCKIRIWNQRSQTILKSYRYKQ-VCKIQIIQEG 56 (64)
Q Consensus 19 lkkgllcckiriwnqrsqtilksyrykq-vckiqiiqeg 56 (64)
||.| -||++|- ..||.||.-|- |-|+.|+-|.
T Consensus 71 LK~G---~KIKVW~---S~iLESyP~Km~V~KfEiv~~~ 103 (108)
T 2jqo_A 71 LKRG---EKIKVWF---HTRKESNPPSATIQKYELLLEH 103 (108)
T ss_dssp CCTT---EEEEEEE---EEEECSSSCEEEEEEEEECCSS
T ss_pred CCCC---CEEEEEH---HHHHHHCCCCEEEEEEEEEEEC
T ss_conf 1268---8899855---7445218975088878765410
No 2
>1s12_A Hypothetical protein TM1457; crystal, structural genomics, PSI, berkeley structural genomics center, BSGC, protein structure initiative; 2.00A {Thermotoga maritima} SCOP: d.64.2.1
Probab=22.74 E-value=35 Score=15.30 Aligned_cols=38 Identities=18% Similarity=0.406 Sum_probs=30.4
Q ss_pred HCCEEEEEEEEEECHHHHHHHHC---------CCCEEEEEEEEECCC
Q ss_conf 03604888898612137788630---------200146899983285
Q 537021.9.peg.5 20 KKGLLCCKIRIWNQRSQTILKSY---------RYKQVCKIQIIQEGS 57 (64)
Q Consensus 20 kkgllcckiriwnqrsqtilksy---------rykqvckiqiiqegs 57 (64)
+.|.+.|++.--++..|.+|++. .|.+--++.+..+||
T Consensus 48 ~~G~l~~~~~~~~~~~q~ll~~~~~gL~~I~~~Yp~~Iki~v~e~~~ 94 (94)
T 1s12_A 48 ESGYLKVKFEELENCEVKVLAAMVRSLKELEQKFPSQIRVEVIDNGS 94 (94)
T ss_dssp ETTEEEEEECSCCHHHHHHHHHHHHHHHHHHHHSTTTEEEEECCCCC
T ss_pred ECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 68999999579896899999999999999998666638999964899
No 3
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=8.24 E-value=86 Score=13.25 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=11.7
Q ss_pred HHHHHH-HHHHHHCCEEEE
Q ss_conf 123442-078640360488
Q 537021.9.peg.5 9 KKSLYM-SLSFLKKGLLCC 26 (64)
Q Consensus 9 kkslym-slsflkkgllcc 26 (64)
|+.-|- -+-|++|||--.
T Consensus 28 K~Cc~HCq~CFl~KGLGIs 46 (86)
T 3mi9_C 28 KKCCFHCQVCFITKALGIS 46 (86)
T ss_dssp TTGGGSSHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHCCCCCC
T ss_conf 0056674787730466623
No 4
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=6.93 E-value=1.3e+02 Score=12.33 Aligned_cols=22 Identities=23% Similarity=0.614 Sum_probs=11.1
Q ss_pred EEEEEECHHHHHHHHCCCCEEE
Q ss_conf 8898612137788630200146
Q 537021.9.peg.5 27 KIRIWNQRSQTILKSYRYKQVC 48 (64)
Q Consensus 27 kiriwnqrsqtilksyrykqvc 48 (64)
.|++|+-|.+..+++++...-.
T Consensus 237 ~i~lWDlr~~~~~~~~~~~~~~ 258 (437)
T 3gre_A 237 IIDIWDIRFNVLIRSWSFGDHA 258 (437)
T ss_dssp CEEEEETTTTEEEEEEBCTTCE
T ss_pred CCEEEECCCCCEEEEEECCCCC
T ss_conf 6459988889587888868988
No 5
>2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta}
Probab=6.06 E-value=1.2e+02 Score=12.54 Aligned_cols=14 Identities=43% Similarity=1.104 Sum_probs=11.1
Q ss_pred CCEEEEEEEEEECH
Q ss_conf 36048888986121
Q 537021.9.peg.5 21 KGLLCCKIRIWNQR 34 (64)
Q Consensus 21 kgllcckiriwnqr 34 (64)
.||-|-...||+.+
T Consensus 20 sgl~ckel~iw~s~ 33 (36)
T 2e2s_A 20 SGLKCKELSIWDSR 33 (36)
T ss_dssp TTCCEEEEETTEEE
T ss_pred CCCEEEEEEEEHHH
T ss_conf 78611221000233
No 6
>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=4.82 E-value=1.4e+02 Score=12.21 Aligned_cols=11 Identities=36% Similarity=1.132 Sum_probs=7.7
Q ss_pred EEEEEEEEECH
Q ss_conf 48888986121
Q 537021.9.peg.5 24 LCCKIRIWNQR 34 (64)
Q Consensus 24 lcckiriwnqr 34 (64)
-|-..|||-..
T Consensus 3 rcnrvriwvnk 13 (26)
T 1hym_B 3 RCNRVRIWVNK 13 (26)
T ss_dssp CTTEEEEEEET
T ss_pred CCCEEEEEECC
T ss_conf 42169999826
No 7
>2g0i_A Hypothetical protein SMU.848; 2-layer (alpha-beta)-sandwich, unknown function; 1.85A {Streptococcus mutans} SCOP: d.64.2.1 PDB: 2g0j_A
Probab=4.55 E-value=1.9e+02 Score=11.46 Aligned_cols=35 Identities=9% Similarity=0.226 Sum_probs=23.9
Q ss_pred CCEEEEEEEE----EECHHHHHHHH---------CCCCEEEEEEEEEC
Q ss_conf 3604888898----61213778863---------02001468999832
Q 537021.9.peg.5 21 KGLLCCKIRI----WNQRSQTILKS---------YRYKQVCKIQIIQE 55 (64)
Q Consensus 21 kgllcckiri----wnqrsqtilks---------yrykqvckiqiiqe 55 (64)
.|.+-|.+.. .+...|.+|++ ..|.+-.+|++|+|
T Consensus 98 dGyl~v~l~~~~~~~~~~~q~LL~tm~~gL~~I~e~Yp~yIkIkvi~e 145 (145)
T 2g0i_A 98 GGYMKIDLSYITNKSDEKVQLLFEAFLLGITNLAENSPEFVTAKIMTQ 145 (145)
T ss_dssp TCEEEEECTTCTTTTCHHHHHHHHHHHHHHHHHHHHCTTTEEEEEEEC
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 966999985788764789999999999999999986645479999839
No 8
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=4.52 E-value=1.3e+02 Score=12.37 Aligned_cols=10 Identities=40% Similarity=0.747 Sum_probs=7.2
Q ss_pred HHHHHHCCEE
Q ss_conf 0786403604
Q 537021.9.peg.5 15 SLSFLKKGLL 24 (64)
Q Consensus 15 slsflkkgll 24 (64)
-+-|++|||-
T Consensus 35 q~CFl~KGLG 44 (86)
T 1tac_A 35 QVAFITKGLG 44 (86)
T ss_dssp CCSCSSTTSS
T ss_pred HHHHHHCCCC
T ss_conf 8877423656
No 9
>1g1p_A Conotoxin EVIA; three disulfide linkages, CIS/trans isomerism of Leu12- Pro13 peptide bond, hydroxyproline; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1 PDB: 1g1z_A*
Probab=4.44 E-value=81 Score=13.39 Aligned_cols=14 Identities=50% Similarity=0.857 Sum_probs=10.0
Q ss_pred HHHHHHHHHCCEEE
Q ss_conf 44207864036048
Q 537021.9.peg.5 12 LYMSLSFLKKGLLC 25 (64)
Q Consensus 12 lymslsflkkgllc 25 (64)
-+-||..||.||-|
T Consensus 8 gfcslpilknglcc 21 (33)
T 1g1p_A 8 GFCSLPILKNGLCC 21 (33)
T ss_dssp SBCCCSSSSCCCBT
T ss_pred CCEECHHHCCCCCC
T ss_conf 51503333577100
No 10
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=4.28 E-value=1.2e+02 Score=12.52 Aligned_cols=18 Identities=33% Similarity=0.960 Sum_probs=12.6
Q ss_pred EEEEEEEECHHHHHHHHC
Q ss_conf 888898612137788630
Q 537021.9.peg.5 25 CCKIRIWNQRSQTILKSY 42 (64)
Q Consensus 25 cckiriwnqrsqtilksy 42 (64)
-|++||||-.++.++..+
T Consensus 240 dh~LKiWnL~t~~~v~t~ 257 (729)
T 3f7f_A 240 NCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp TCEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCCEEEEE
T ss_conf 873898886888605421
Done!