RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.54_1
         (64 letters)



>gnl|CDD|35524 KOG0303, KOG0303, KOG0303, Actin-binding protein Coronin, contains
           WD40 repeats [Cytoskeleton].
          Length = 472

 Score = 26.0 bits (57), Expect = 2.5
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 6/31 (19%)

Query: 15  SLSFLKKGLLCC------KIRIWNQRSQTIL 39
           S+SF + G L C      K+R+ + R  T++
Sbjct: 178 SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVV 208


>gnl|CDD|38075 KOG2864, KOG2864, KOG2864, Nuclear division RFT1 protein [Cell
           cycle control, cell division, chromosome partitioning].
          Length = 530

 Score = 24.1 bits (52), Expect = 7.7
 Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 2   IKQRILTKKSLYMSLSFLKKGLLCCKIRIWNQRSQTILKSYRYKQVCKIQIIQEGSALLL 61
           I+  I   +        L K     +   ++     + KS+   Q    Q++ EG   ++
Sbjct: 208 IRGSIPETEPFSRFSDLLPKVSENERGIFFDNDLLKLTKSF-TFQSFLKQLLTEGDKYVM 266


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.331    0.141    0.416 

Gapped
Lambda     K      H
   0.267   0.0628    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 697,314
Number of extensions: 24864
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 6
Length of query: 64
Length of database: 6,263,737
Length adjustment: 36
Effective length of query: 28
Effective length of database: 5,485,813
Effective search space: 153602764
Effective search space used: 153602764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 51 (23.6 bits)