RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.54_1 (64 letters) >1s12_A Hypothetical protein TM1457; crystal, structural genomics, PSI, berkeley structural genomics center, BSGC, protein structure initiative; 2.00A {Thermotoga maritima} SCOP: d.64.2.1 Length = 94 Score = 25.1 bits (55), Expect = 3.8 Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 9/47 (19%) Query: 20 KKGLLCCKIRIWNQRSQTILKSY---------RYKQVCKIQIIQEGS 57 + G L K +L + ++ ++++I GS Sbjct: 48 ESGYLKVKFEELENCEVKVLAAMVRSLKELEQKFPSQIRVEVIDNGS 94 >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 Score = 25.1 bits (54), Expect = 3.9 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 6/62 (9%) Query: 5 RILTKKSLYMSLSFLKKGLLCC-----KIRIWNQRSQTILKSYRYK-QVCKIQIIQEGSA 58 L +S + F+K L + + + SQ +L + ++ I Sbjct: 53 IKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDW 112 Query: 59 LL 60 +L Sbjct: 113 ML 114 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.331 0.141 0.416 Gapped Lambda K H 0.267 0.0510 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 496,780 Number of extensions: 16358 Number of successful extensions: 45 Number of sequences better than 10.0: 1 Number of HSP's gapped: 45 Number of HSP's successfully gapped: 3 Length of query: 64 Length of database: 5,693,230 Length adjustment: 35 Effective length of query: 29 Effective length of database: 4,844,690 Effective search space: 140496010 Effective search space used: 140496010 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 50 (23.6 bits)