RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.54_1
         (64 letters)



>1s12_A Hypothetical protein TM1457; crystal, structural genomics, PSI,
          berkeley structural genomics center, BSGC, protein
          structure initiative; 2.00A {Thermotoga maritima} SCOP:
          d.64.2.1
          Length = 94

 Score = 25.1 bits (55), Expect = 3.8
 Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 9/47 (19%)

Query: 20 KKGLLCCKIRIWNQRSQTILKSY---------RYKQVCKIQIIQEGS 57
          + G L  K          +L +          ++    ++++I  GS
Sbjct: 48 ESGYLKVKFEELENCEVKVLAAMVRSLKELEQKFPSQIRVEVIDNGS 94


>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
           complex; 2.40A {Saccharomyces cerevisiae}
          Length = 902

 Score = 25.1 bits (54), Expect = 3.9
 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 6/62 (9%)

Query: 5   RILTKKSLYMSLSFLKKGLLCC-----KIRIWNQRSQTILKSYRYK-QVCKIQIIQEGSA 58
             L  +S    + F+K   L        + + +  SQ +L +     ++  I        
Sbjct: 53  IKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDW 112

Query: 59  LL 60
           +L
Sbjct: 113 ML 114


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.331    0.141    0.416 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 496,780
Number of extensions: 16358
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 3
Length of query: 64
Length of database: 5,693,230
Length adjustment: 35
Effective length of query: 29
Effective length of database: 4,844,690
Effective search space: 140496010
Effective search space used: 140496010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.6 bits)