Query 537021.9.peg.542_1 Match_columns 54 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Tue May 24 20:45:07 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_542.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1n3j_A A612L, histone H3 lysi 19.3 4.8 0.00014 20.7 -3.9 12 41-52 15-26 (35) 2 >2czr_A TBP-interacting protei 5.8 67 0.002 14.7 -1.7 11 10-20 56-66 (82) 3 >2pyx_A Tryptophan halogenase; 4.8 2.2E+02 0.0064 12.1 0.4 12 32-43 78-89 (93) 4 >3ei3_B DNA damage-binding pro 4.7 1.2E+02 0.0036 13.4 -1.0 12 5-16 54-65 (113) 5 >3c8y_A Iron hydrogenase 1; di 4.1 67 0.002 14.8 -2.7 10 37-46 49-58 (122) 6 >1n81_A Plasmodium falciparum 3.8 3.2E+02 0.0095 11.2 1.2 17 21-37 41-57 (94) 7 >1bjt_A Topoisomerase II; quat 3.6 2.3E+02 0.0069 11.9 -0.3 12 40-51 124-135 (213) 8 >2i7n_A Pantothenate kinase 1; 3.6 3.4E+02 0.0099 11.1 1.5 18 31-48 128-145 (161) 9 >2zyd_A 6-phosphogluconate deh 3.4 3.5E+02 0.01 11.0 1.1 16 18-36 244-259 (261) 10 >2vug_A PAB1020; RNA, ligase, 3.2 3.7E+02 0.011 10.9 1.0 8 40-47 19-26 (88) No 1 >>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} (A:34-68) Probab=19.30 E-value=4.8 Score=20.70 Aligned_cols=12 Identities=58% Similarity=0.802 Sum_probs=8.5 Q ss_pred HHHHHHHHHHHH Q ss_conf 999984787776 Q 537021.9.peg.5 41 FDYLFSRNLLSK 52 (54) Q Consensus 41 fdylfsrnllsk 52 (54) -||+|||.-+|. T Consensus 15 EDYlFSR~~~SA 26 (35) T 1n3j_A 15 EDYLFSRKNMSA 26 (35) T ss_dssp CSEEEEETTEEE T ss_pred HEEEECCCCCEE T ss_conf 508842688608 No 2 >>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription regulator; 2.30A {Thermococcus kodakarensis KOD1} (A:14-95) Probab=5.78 E-value=67 Score=14.74 Aligned_cols=11 Identities=55% Similarity=0.875 Sum_probs=7.6 Q ss_pred HHCCHHHHHHH Q ss_conf 43305678388 Q 537021.9.peg.5 10 VRGIDIFLIPA 20 (54) Q Consensus 10 vrgidiflipa 20 (54) .+||||+.||. T Consensus 56 ~~Gi~i~vvP~ 66 (82) T 2czr_A 56 VNGIHIVAIPD 66 (82) T ss_dssp CSSEEEEEESC T ss_pred CCCEEEEEECC T ss_conf 79818999779 No 3 >>2pyx_A Tryptophan halogenase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina ncimb 400} (A:386-478) Probab=4.78 E-value=2.2e+02 Score=12.10 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=9.0 Q ss_pred HHHHHHHHHHHH Q ss_conf 035699983999 Q 537021.9.peg.5 32 DSYECVMMGFDY 43 (54) Q Consensus 32 dsyecvmmgfdy 43 (54) .||-||+.|.+. T Consensus 78 ~sw~~vl~G~g~ 89 (93) T 2pyx_A 78 ASFQYVLYGXSF 89 (93) T ss_dssp HHHHHHHHHTTC T ss_pred CCHHHHHCCCCC T ss_conf 659999528999 No 4 >>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* (B:43-72,B:301-383) Probab=4.73 E-value=1.2e+02 Score=13.42 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=7.8 Q ss_pred HHHHHHHCCHHH Q ss_conf 310424330567 Q 537021.9.peg.5 5 FYLYAVRGIDIF 16 (54) Q Consensus 5 fylyavrgidif 16 (54) |-.|+-|+|||| T Consensus 54 f~~~~~R~IDIf 65 (113) T 3ei3_B 54 LLLNDKRTIDIY 65 (113) T ss_dssp TCTTCCCCEEEE T ss_pred EEEECCCEEEEE T ss_conf 799589869999 No 5 >>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, 4Fe-4S, iron-sulfur, metal-binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} (A:210-268,A:344-406) Probab=4.09 E-value=67 Score=14.75 Aligned_cols=10 Identities=40% Similarity=0.876 Sum_probs=6.4 Q ss_pred HHHHHHHHHH Q ss_conf 9983999984 Q 537021.9.peg.5 37 VMMGFDYLFS 46 (54) Q Consensus 37 vmmgfdylfs 46 (54) -.+||||.|. T Consensus 49 r~lGfd~VfD 58 (122) T 3c8y_A 49 RQLGFDKIFD 58 (122) T ss_dssp HHHTCSEEEE T ss_pred HHCCCCEEEE T ss_conf 9849989996 No 6 >>1n81_A Plasmodium falciparum gamete antigen 27/25; gametocyte, helical, helix-turn-helix, PXXP, unknown function; 2.10A {Plasmodium falciparum 3D7} (A:93-186) Probab=3.76 E-value=3.2e+02 Score=11.19 Aligned_cols=17 Identities=47% Similarity=0.671 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999985035699 Q 537021.9.peg.5 21 MFSSLLLISLFDSYECV 37 (54) Q Consensus 21 mfsslllislfdsyecv 37 (54) |-..-|.--|||.||.| T Consensus 41 mndkklirmlfdtyeyv 57 (94) T 1n81_A 41 MNDKKLIRMLFDTYEYV 57 (94) T ss_dssp HTCHHHHHHHHHHHHHH T ss_pred HCHHHHHHHHHHHHHHC T ss_conf 53099999999999722 No 7 >>1bjt_A Topoisomerase II; quaternary change, DNA-binding, DNA topology; 2.50A {Saccharomyces cerevisiae} (A:581-793) Probab=3.58 E-value=2.3e+02 Score=11.93 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHH Q ss_conf 399998478777 Q 537021.9.peg.5 40 GFDYLFSRNLLS 51 (54) Q Consensus 40 gfdylfsrnlls 51 (54) +||||.+..+.| T Consensus 124 ~yDYLL~Mpi~s 135 (213) T 1bjt_A 124 TYEYLLGMRIWS 135 (213) T ss_dssp BSHHHHTSCGGG T ss_pred HHHHHHHCHHHH T ss_conf 787998587888 No 8 >>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} (A:1-147,A:347-360) Probab=3.56 E-value=3.4e+02 Score=11.09 Aligned_cols=18 Identities=28% Similarity=0.643 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 503569998399998478 Q 537021.9.peg.5 31 FDSYECVMMGFDYLFSRN 48 (54) Q Consensus 31 fdsyecvmmgfdylfsrn 48 (54) .|.-+|...|.+++.+.. T Consensus 128 ~DEM~cLI~GlnFll~~i 145 (161) T 2i7n_A 128 LDELDCLIQGLLYVDSVG 145 (161) T ss_dssp CCHHHHHHHHHHHHHHHC T ss_pred ECHHHHHHHHHHHHHHHC T ss_conf 248999999999998612 No 9 >>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, gluconate utilization, pentose shunt; HET: GLO; 1.50A {Escherichia coli k-12} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* (A:187-447) Probab=3.40 E-value=3.5e+02 Score=11.00 Aligned_cols=16 Identities=25% Similarity=0.748 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 3889999999998503569 Q 537021.9.peg.5 18 IPAMFSSLLLISLFDSYEC 36 (54) Q Consensus 18 ipamfsslllislfdsyec 36 (54) +|++-|+| +.||+|.| T Consensus 244 vP~lssaL---~Y~d~~rt 259 (261) T 2zyd_A 244 VPTFSAAV---AYYDSYRA 259 (261) T ss_dssp CHHHHHHH---HHHHHHTC T ss_pred HHHHHHHH---HHHHHHCC T ss_conf 89999999---99999617 No 10 >>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5} (A:252-321,A:372-389) Probab=3.16 E-value=3.7e+02 Score=10.87 Aligned_cols=8 Identities=38% Similarity=0.384 Sum_probs=0.0 Q ss_pred HHHHHHHH Q ss_conf 39999847 Q 537021.9.peg.5 40 GFDYLFSR 47 (54) Q Consensus 40 gfdylfsr 47 (54) |-||+||| T Consensus 19 g~dyf~sR 26 (88) T 2vug_A 19 PPGYFTSR 26 (88) T ss_dssp CHHHHHHH T ss_pred EEEEECCC T ss_conf 00004066 Done!