RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.542_1 (54 letters) >gnl|CDD|163197 TIGR03270, methan_mark_4, putative methanogen marker protein 4. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely linked to it. Some members have been suggested to be a methyltransferase, based on the proximity of its gene to genes of the multi-subunit complex, N5-methyl-tetrahydromethanopterin--coenzyme M methyltransferase. That context is not conserved, however. The family shows similarity to various phosphate acyltranferases. Length = 202 Score = 25.0 bits (55), Expect = 4.3 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%) Query: 9 AVRGIDIFLIPAMFSSLLLISLFDSYECVMMGFDYLF---SRN 48 A GI LI F SL L+ SY ++ + +F SR+ Sbjct: 150 APDGISGNLI---FRSLALVGGGRSYGAPVLNDEGVFVDTSRS 189 >gnl|CDD|172588 PRK14098, PRK14098, glycogen synthase; Provisional. Length = 489 Score = 24.3 bits (53), Expect = 6.8 Identities = 8/28 (28%), Positives = 17/28 (60%) Query: 4 SFYLYAVRGIDIFLIPAMFSSLLLISLF 31 +F+ A+ G+D+ L+P S ++ +F Sbjct: 373 AFFHLAIAGLDMLLMPGKIESCGMLQMF 400 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.341 0.153 0.457 Gapped Lambda K H 0.267 0.0753 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 882,750 Number of extensions: 39598 Number of successful extensions: 168 Number of sequences better than 10.0: 1 Number of HSP's gapped: 168 Number of HSP's successfully gapped: 12 Length of query: 54 Length of database: 5,994,473 Length adjustment: 26 Effective length of query: 28 Effective length of database: 5,432,665 Effective search space: 152114620 Effective search space used: 152114620 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.9 bits) S2: 50 (23.0 bits)