RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.542_1
         (54 letters)



>gnl|CDD|163197 TIGR03270, methan_mark_4, putative methanogen marker protein 4.
           Members of this protein family, to date, are found in a
           completed prokaryotic genome if and only if the species
           is one of the archaeal methanogens. The exact function
           is unknown, but likely is linked to methanogenesis or a
           process closely linked to it. Some members have been
           suggested to be a methyltransferase, based on the
           proximity of its gene to genes of the multi-subunit
           complex, N5-methyl-tetrahydromethanopterin--coenzyme M
           methyltransferase. That context is not conserved,
           however. The family shows similarity to various
           phosphate acyltranferases.
          Length = 202

 Score = 25.0 bits (55), Expect = 4.3
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 9   AVRGIDIFLIPAMFSSLLLISLFDSYECVMMGFDYLF---SRN 48
           A  GI   LI   F SL L+    SY   ++  + +F   SR+
Sbjct: 150 APDGISGNLI---FRSLALVGGGRSYGAPVLNDEGVFVDTSRS 189


>gnl|CDD|172588 PRK14098, PRK14098, glycogen synthase; Provisional.
          Length = 489

 Score = 24.3 bits (53), Expect = 6.8
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 4   SFYLYAVRGIDIFLIPAMFSSLLLISLF 31
           +F+  A+ G+D+ L+P    S  ++ +F
Sbjct: 373 AFFHLAIAGLDMLLMPGKIESCGMLQMF 400


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.341    0.153    0.457 

Gapped
Lambda     K      H
   0.267   0.0753    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 882,750
Number of extensions: 39598
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 12
Length of query: 54
Length of database: 5,994,473
Length adjustment: 26
Effective length of query: 28
Effective length of database: 5,432,665
Effective search space: 152114620
Effective search space used: 152114620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 50 (23.0 bits)