Query         537021.9.peg.563_1
Match_columns 37
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed May 25 00:12:26 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_563.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1pp5_A Microcin J25; lariat, p  10.4      32  0.0013   16.9  -0.9   12   12-23      8-20  (26)
  2 1x13_A NAD(P) transhydrogenase   7.2 1.3E+02  0.0055   14.0   1.2   11    2-12    287-297 (401)
  3 1nkw_Y 50S ribosomal protein L   6.3 1.7E+02  0.0073   13.5   1.4   18    2-19     31-48  (73)
  4 2kg4_A Growth arrest and DNA-d   6.1      89  0.0037   14.8  -0.1   14   19-32    142-155 (165)
  5 1l7d_A Nicotinamide nucleotide   5.7 1.8E+02  0.0074   13.5   1.2   10    2-11    289-298 (384)
  6 1vs6_Z 50S ribosomal protein L   5.5      79  0.0033   15.1  -0.7   19    2-20     32-50  (70)
  7 2qrj_A Saccharopine dehydrogen   5.2 1.6E+02  0.0069   13.6   0.8   10    2-11    295-304 (394)
  8 3f1f_4 50S ribosomal protein L   5.0 1.6E+02  0.0069   13.6   0.7   16    1-16     56-71  (97)
  9 2j01_4 50S ribosomal protein L   4.9      68  0.0029   15.4  -1.4   16    1-16     30-45  (71)
 10 1hc8_A Ribosomal protein L11;    4.3 1.5E+02  0.0065   13.7   0.1   17   11-27      1-17  (76)

No 1  
>1pp5_A Microcin J25; lariat, protoknot, backbone-sidechain amide linkage, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: j.5.1.1 PDB: 1q71_A
Probab=10.40  E-value=32  Score=16.95  Aligned_cols=12  Identities=58%  Similarity=1.420  Sum_probs=8.6

Q ss_pred             CEEEEE-HHHHHH
Q ss_conf             323240-034443
Q 537021.9.peg.5   12 PFFVGV-APISFF   23 (37)
Q Consensus        12 pffvgv-apisff   23 (37)
                      .+|||. .||||+
T Consensus         8 eyfvgigtpisfy   20 (26)
T 1pp5_A            8 EYFVGIGTPISFY   20 (26)
T ss_dssp             CCCSSSSCCCSEE
T ss_pred             CEEEECCCCEEEE
T ss_conf             1347238975873


No 2  
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=7.19  E-value=1.3e+02  Score=14.05  Aligned_cols=11  Identities=27%  Similarity=0.362  Sum_probs=8.3

Q ss_pred             EEEEECHHHCC
Q ss_conf             89961020173
Q 537021.9.peg.5    2 VFVDISCDEFP   12 (37)
Q Consensus         2 vfvdiscdefp   12 (37)
                      |.+|||||.-.
T Consensus       287 VIvDvs~D~GG  297 (401)
T 1x13_A          287 VIVDLAAQNGG  297 (401)
T ss_dssp             EEEETTGGGTC
T ss_pred             EEEEEECCCCC
T ss_conf             79997257899


No 3  
>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4
Probab=6.25  E-value=1.7e+02  Score=13.49  Aligned_cols=18  Identities=28%  Similarity=0.576  Sum_probs=14.1

Q ss_pred             EEEEECHHHCCEEEEEHH
Q ss_conf             899610201732324003
Q 537021.9.peg.5    2 VFVDISCDEFPFFVGVAP   19 (37)
Q Consensus         2 vfvdiscdefpffvgvap   19 (37)
                      +-+||+-+--|||.|-.-
T Consensus        31 ~~vdv~s~~HPfyTGkq~   48 (73)
T 1nkw_Y           31 IHVDVWSGVHPFWTGEER   48 (73)
T ss_pred             EEEEECCCCCCCEECCEE
T ss_conf             788876888771818788


No 4  
>2kg4_A Growth arrest and DNA-damage-inducible protein GADD45 alpha; flexible regions, monomer, cell cycle; NMR {Homo sapiens}
Probab=6.13  E-value=89  Score=14.85  Aligned_cols=14  Identities=36%  Similarity=0.899  Sum_probs=10.1

Q ss_pred             HHHHHHHCCCCCCE
Q ss_conf             34443111223311
Q 537021.9.peg.5   19 PISFFCKEARWKDA   32 (37)
Q Consensus        19 pisffckearwkda   32 (37)
                      -..-||+|.||.+-
T Consensus       142 ~l~~yc~esr~~~~  155 (165)
T 2kg4_A          142 QLICFCRESRYMDQ  155 (165)
T ss_dssp             HHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHCCCCC
T ss_conf             99999998645477


No 5  
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=5.73  E-value=1.8e+02  Score=13.46  Aligned_cols=10  Identities=20%  Similarity=0.454  Sum_probs=7.4

Q ss_pred             EEEEECHHHC
Q ss_conf             8996102017
Q 537021.9.peg.5    2 VFVDISCDEF   11 (37)
Q Consensus         2 vfvdiscdef   11 (37)
                      |.+|||||.=
T Consensus       289 vIvDiscD~g  298 (384)
T 1l7d_A          289 VIIDLAVEAG  298 (384)
T ss_dssp             EEEETTGGGT
T ss_pred             EEEEEECCCC
T ss_conf             3578740689


No 6  
>1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} SCOP: d.325.1.2 PDB: 1vs8_Z 2aw4_Z 2awb_Z 2j28_Z 2rdo_Z 2vhm_Z 2vhn_Z 3bbx_Z 3e1b_S 3e1d_S
Probab=5.54  E-value=79  Score=15.10  Aligned_cols=19  Identities=26%  Similarity=0.483  Sum_probs=14.4

Q ss_pred             EEEEECHHHCCEEEEEHHH
Q ss_conf             8996102017323240034
Q 537021.9.peg.5    2 VFVDISCDEFPFFVGVAPI   20 (37)
Q Consensus         2 vfvdiscdefpffvgvapi   20 (37)
                      +.+||+-+--|||.|-.-+
T Consensus        32 ~~vdi~s~~HPfyTGkq~~   50 (70)
T 1vs6_Z           32 LNLDVCSKCHPFFTGKQRD   50 (70)
T ss_dssp             CCCBCCSSSCCBCCCCCTT
T ss_pred             EEEEECCCCCCCCCCCEEE
T ss_conf             8998789997769397878


No 7  
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A
Probab=5.20  E-value=1.6e+02  Score=13.61  Aligned_cols=10  Identities=40%  Similarity=0.547  Sum_probs=8.0

Q ss_pred             EEEEECHHHC
Q ss_conf             8996102017
Q 537021.9.peg.5    2 VFVDISCDEF   11 (37)
Q Consensus         2 vfvdiscdef   11 (37)
                      |.||||||.=
T Consensus       295 VIVDiA~D~G  304 (394)
T 2qrj_A          295 TVVDVSADTT  304 (394)
T ss_dssp             EEEETTCCTT
T ss_pred             EEEEECCCCC
T ss_conf             8999747899


No 8  
>3f1f_4 50S ribosomal protein L31; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 3d5d_4 3d5b_4 3f1h_4
Probab=5.02  E-value=1.6e+02  Score=13.60  Aligned_cols=16  Identities=25%  Similarity=0.802  Sum_probs=0.0

Q ss_pred             CEEEEECHHHCCEEEE
Q ss_conf             8899610201732324
Q 537021.9.peg.5    1 LVFVDISCDEFPFFVG   16 (37)
Q Consensus         1 lvfvdiscdefpffvg   16 (37)
                      .+.+||+-.--|||.|
T Consensus        56 ~~~vdIcs~cHPFyTG   71 (97)
T 3f1f_4           56 EIYVEVCSKCHPFYTG   71 (97)
T ss_dssp             CEEESSCTTC------
T ss_pred             CEEEEECCCCCCCCCC
T ss_conf             5898876898774818


No 9  
>2j01_4 50S ribosomal protein L31; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: d.325.1.2 PDB: 2hgq_3 2hgj_3 2hgu_3 2j03_4 2v47_4 2v49_4 2wdi_4 2wdj_4 2wdl_4 2wdn_4 2wh2_4 2wrj_4 2wrl_4 2wro_4 2wrr_4 2x9s_4 2x9u_4 2xg0_4 2xg2_4 3hux_4 ...
Probab=4.89  E-value=68  Score=15.40  Aligned_cols=16  Identities=25%  Similarity=0.802  Sum_probs=0.0

Q ss_pred             CEEEEECHHHCCEEEE
Q ss_conf             8899610201732324
Q 537021.9.peg.5    1 LVFVDISCDEFPFFVG   16 (37)
Q Consensus         1 lvfvdiscdefpffvg   16 (37)
                      ++.+||+-.--|||.|
T Consensus        30 ~~~vdv~s~~HPFyTG   45 (71)
T 2j01_4           30 EIYVEVCSKCHPFYTG   45 (71)
T ss_dssp             CSSCCSCCCCCSSSCC
T ss_pred             CEEEEECCCCCCCCCC
T ss_conf             2898887998774828


No 10 
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A
Probab=4.25  E-value=1.5e+02  Score=13.73  Aligned_cols=17  Identities=29%  Similarity=0.581  Sum_probs=0.0

Q ss_pred             CCEEEEEHHHHHHHHCC
Q ss_conf             73232400344431112
Q 537021.9.peg.5   11 FPFFVGVAPISFFCKEA   27 (37)
Q Consensus        11 fpffvgvapisffckea   27 (37)
                      |-|-+...|.|++-|.+
T Consensus         1 F~f~~ktPP~s~llkka   17 (76)
T 1hc8_A            1 FTFITKTPPAAVLLKKA   17 (76)
T ss_dssp             -CCCCCCCCHHHHHHHH
T ss_pred             CEEEECCCCHHHHHHHH
T ss_conf             94897589889999999


Done!