Query 537021.9.peg.563_1 Match_columns 37 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 00:12:26 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_563.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1pp5_A Microcin J25; lariat, p 10.4 32 0.0013 16.9 -0.9 12 12-23 8-20 (26) 2 1x13_A NAD(P) transhydrogenase 7.2 1.3E+02 0.0055 14.0 1.2 11 2-12 287-297 (401) 3 1nkw_Y 50S ribosomal protein L 6.3 1.7E+02 0.0073 13.5 1.4 18 2-19 31-48 (73) 4 2kg4_A Growth arrest and DNA-d 6.1 89 0.0037 14.8 -0.1 14 19-32 142-155 (165) 5 1l7d_A Nicotinamide nucleotide 5.7 1.8E+02 0.0074 13.5 1.2 10 2-11 289-298 (384) 6 1vs6_Z 50S ribosomal protein L 5.5 79 0.0033 15.1 -0.7 19 2-20 32-50 (70) 7 2qrj_A Saccharopine dehydrogen 5.2 1.6E+02 0.0069 13.6 0.8 10 2-11 295-304 (394) 8 3f1f_4 50S ribosomal protein L 5.0 1.6E+02 0.0069 13.6 0.7 16 1-16 56-71 (97) 9 2j01_4 50S ribosomal protein L 4.9 68 0.0029 15.4 -1.4 16 1-16 30-45 (71) 10 1hc8_A Ribosomal protein L11; 4.3 1.5E+02 0.0065 13.7 0.1 17 11-27 1-17 (76) No 1 >1pp5_A Microcin J25; lariat, protoknot, backbone-sidechain amide linkage, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: j.5.1.1 PDB: 1q71_A Probab=10.40 E-value=32 Score=16.95 Aligned_cols=12 Identities=58% Similarity=1.420 Sum_probs=8.6 Q ss_pred CEEEEE-HHHHHH Q ss_conf 323240-034443 Q 537021.9.peg.5 12 PFFVGV-APISFF 23 (37) Q Consensus 12 pffvgv-apisff 23 (37) .+|||. .||||+ T Consensus 8 eyfvgigtpisfy 20 (26) T 1pp5_A 8 EYFVGIGTPISFY 20 (26) T ss_dssp CCCSSSSCCCSEE T ss_pred CEEEECCCCEEEE T ss_conf 1347238975873 No 2 >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* Probab=7.19 E-value=1.3e+02 Score=14.05 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=8.3 Q ss_pred EEEEECHHHCC Q ss_conf 89961020173 Q 537021.9.peg.5 2 VFVDISCDEFP 12 (37) Q Consensus 2 vfvdiscdefp 12 (37) |.+|||||.-. T Consensus 287 VIvDvs~D~GG 297 (401) T 1x13_A 287 VIVDLAAQNGG 297 (401) T ss_dssp EEEETTGGGTC T ss_pred EEEEEECCCCC T ss_conf 79997257899 No 3 >1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4 Probab=6.25 E-value=1.7e+02 Score=13.49 Aligned_cols=18 Identities=28% Similarity=0.576 Sum_probs=14.1 Q ss_pred EEEEECHHHCCEEEEEHH Q ss_conf 899610201732324003 Q 537021.9.peg.5 2 VFVDISCDEFPFFVGVAP 19 (37) Q Consensus 2 vfvdiscdefpffvgvap 19 (37) +-+||+-+--|||.|-.- T Consensus 31 ~~vdv~s~~HPfyTGkq~ 48 (73) T 1nkw_Y 31 IHVDVWSGVHPFWTGEER 48 (73) T ss_pred EEEEECCCCCCCEECCEE T ss_conf 788876888771818788 No 4 >2kg4_A Growth arrest and DNA-damage-inducible protein GADD45 alpha; flexible regions, monomer, cell cycle; NMR {Homo sapiens} Probab=6.13 E-value=89 Score=14.85 Aligned_cols=14 Identities=36% Similarity=0.899 Sum_probs=10.1 Q ss_pred HHHHHHHCCCCCCE Q ss_conf 34443111223311 Q 537021.9.peg.5 19 PISFFCKEARWKDA 32 (37) Q Consensus 19 pisffckearwkda 32 (37) -..-||+|.||.+- T Consensus 142 ~l~~yc~esr~~~~ 155 (165) T 2kg4_A 142 QLICFCRESRYMDQ 155 (165) T ss_dssp HHHHHHHHHHTTTC T ss_pred HHHHHHHHHCCCCC T ss_conf 99999998645477 No 5 >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* Probab=5.73 E-value=1.8e+02 Score=13.46 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=7.4 Q ss_pred EEEEECHHHC Q ss_conf 8996102017 Q 537021.9.peg.5 2 VFVDISCDEF 11 (37) Q Consensus 2 vfvdiscdef 11 (37) |.+|||||.= T Consensus 289 vIvDiscD~g 298 (384) T 1l7d_A 289 VIIDLAVEAG 298 (384) T ss_dssp EEEETTGGGT T ss_pred EEEEEECCCC T ss_conf 3578740689 No 6 >1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} SCOP: d.325.1.2 PDB: 1vs8_Z 2aw4_Z 2awb_Z 2j28_Z 2rdo_Z 2vhm_Z 2vhn_Z 3bbx_Z 3e1b_S 3e1d_S Probab=5.54 E-value=79 Score=15.10 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=14.4 Q ss_pred EEEEECHHHCCEEEEEHHH Q ss_conf 8996102017323240034 Q 537021.9.peg.5 2 VFVDISCDEFPFFVGVAPI 20 (37) Q Consensus 2 vfvdiscdefpffvgvapi 20 (37) +.+||+-+--|||.|-.-+ T Consensus 32 ~~vdi~s~~HPfyTGkq~~ 50 (70) T 1vs6_Z 32 LNLDVCSKCHPFFTGKQRD 50 (70) T ss_dssp CCCBCCSSSCCBCCCCCTT T ss_pred EEEEECCCCCCCCCCCEEE T ss_conf 8998789997769397878 No 7 >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A Probab=5.20 E-value=1.6e+02 Score=13.61 Aligned_cols=10 Identities=40% Similarity=0.547 Sum_probs=8.0 Q ss_pred EEEEECHHHC Q ss_conf 8996102017 Q 537021.9.peg.5 2 VFVDISCDEF 11 (37) Q Consensus 2 vfvdiscdef 11 (37) |.||||||.= T Consensus 295 VIVDiA~D~G 304 (394) T 2qrj_A 295 TVVDVSADTT 304 (394) T ss_dssp EEEETTCCTT T ss_pred EEEEECCCCC T ss_conf 8999747899 No 8 >3f1f_4 50S ribosomal protein L31; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 3d5d_4 3d5b_4 3f1h_4 Probab=5.02 E-value=1.6e+02 Score=13.60 Aligned_cols=16 Identities=25% Similarity=0.802 Sum_probs=0.0 Q ss_pred CEEEEECHHHCCEEEE Q ss_conf 8899610201732324 Q 537021.9.peg.5 1 LVFVDISCDEFPFFVG 16 (37) Q Consensus 1 lvfvdiscdefpffvg 16 (37) .+.+||+-.--|||.| T Consensus 56 ~~~vdIcs~cHPFyTG 71 (97) T 3f1f_4 56 EIYVEVCSKCHPFYTG 71 (97) T ss_dssp CEEESSCTTC------ T ss_pred CEEEEECCCCCCCCCC T ss_conf 5898876898774818 No 9 >2j01_4 50S ribosomal protein L31; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: d.325.1.2 PDB: 2hgq_3 2hgj_3 2hgu_3 2j03_4 2v47_4 2v49_4 2wdi_4 2wdj_4 2wdl_4 2wdn_4 2wh2_4 2wrj_4 2wrl_4 2wro_4 2wrr_4 2x9s_4 2x9u_4 2xg0_4 2xg2_4 3hux_4 ... Probab=4.89 E-value=68 Score=15.40 Aligned_cols=16 Identities=25% Similarity=0.802 Sum_probs=0.0 Q ss_pred CEEEEECHHHCCEEEE Q ss_conf 8899610201732324 Q 537021.9.peg.5 1 LVFVDISCDEFPFFVG 16 (37) Q Consensus 1 lvfvdiscdefpffvg 16 (37) ++.+||+-.--|||.| T Consensus 30 ~~~vdv~s~~HPFyTG 45 (71) T 2j01_4 30 EIYVEVCSKCHPFYTG 45 (71) T ss_dssp CSSCCSCCCCCSSSCC T ss_pred CEEEEECCCCCCCCCC T ss_conf 2898887998774828 No 10 >1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A Probab=4.25 E-value=1.5e+02 Score=13.73 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=0.0 Q ss_pred CCEEEEEHHHHHHHHCC Q ss_conf 73232400344431112 Q 537021.9.peg.5 11 FPFFVGVAPISFFCKEA 27 (37) Q Consensus 11 fpffvgvapisffckea 27 (37) |-|-+...|.|++-|.+ T Consensus 1 F~f~~ktPP~s~llkka 17 (76) T 1hc8_A 1 FTFITKTPPAAVLLKKA 17 (76) T ss_dssp -CCCCCCCCHHHHHHHH T ss_pred CEEEECCCCHHHHHHHH T ss_conf 94897589889999999 Done!