Query 537021.9.peg.568_1
Match_columns 45
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Tue May 24 21:48:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_568.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3cpt_A Mitogen-activated prot 10.5 1.6E+02 0.0046 13.9 2.6 26 15-40 35-60 (143)
2 >2yrv_A AT-rich interactive do 9.9 87 0.0026 15.1 0.5 10 3-12 30-39 (117)
3 >2e79_A Ginkbilobin-2; DUF26 f 9.6 1.4E+02 0.0043 14.1 1.5 17 3-19 91-107 (108)
4 >3k4i_A Uncharacterized protei 8.4 1.8E+02 0.0052 13.6 1.5 13 20-32 169-181 (244)
5 >1q5x_A Regulator of RNAse E a 8.3 1.9E+02 0.0057 13.4 2.2 13 20-32 142-154 (161)
6 >3jyv_E 40S ribosomal protein 8.2 2E+02 0.0058 13.4 1.7 15 20-34 27-41 (74)
7 >3c8o_A Regulator of ribonucle 7.0 2.2E+02 0.0067 13.1 2.2 15 19-33 141-155 (162)
8 >3hz8_A Thiol:disulfide interc 6.7 2E+02 0.0058 13.4 1.1 15 13-27 64-78 (107)
9 >2h85_A Putative ORF1AB polypr 5.6 2.2E+02 0.0064 13.2 0.8 27 11-37 16-47 (66)
10 >3a2v_A Probable peroxiredoxin 5.5 2.8E+02 0.0083 12.6 2.0 14 18-31 124-137 (147)
No 1
>>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} (A:)
Probab=10.52 E-value=1.6e+02 Score=13.87 Aligned_cols=26 Identities=19% Similarity=0.555 Sum_probs=19.3
Q ss_pred ECCCCEEEEECCCCEEEEEEEECCCC
Q ss_conf 41686256707787499984213572
Q 537021.9.peg.5 15 FANLPSVIVGDKEGIVIVCIIISSLP 40 (45)
Q Consensus 15 fanlpsvivgdkegivivciiisslp 40 (45)
+..+-++++-|+||+.|+-..-++-|
T Consensus 35 vdGl~aIvItDrDGVpIikv~~~~~~ 60 (143)
T 3cpt_A 35 VEGLHAIVVSDRDGVPVIKVANDNAP 60 (143)
T ss_dssp STTEEEEEEECTTSCEEEEEECTTSC
T ss_pred CCCEEEEEEECCCCCEEEEECCCCCC
T ss_conf 67757999987999688884066892
No 2
>>2yrv_A AT-rich interactive domain-containing protein 4A; ARID domain-containing protein 4A, retinoblastoma-binding protein 1, RBBP-1, structural genomics; NMR {Homo sapiens} (A:)
Probab=9.92 E-value=87 Score=15.11 Aligned_cols=10 Identities=60% Similarity=1.278 Sum_probs=8.7
Q ss_pred CCEEECCHHE
Q ss_conf 7468352210
Q 537021.9.peg.5 3 PGLILSPSCF 12 (45)
Q Consensus 3 pglilspscf 12 (45)
|+|+.+|||-
T Consensus 30 PaLVV~Psc~ 39 (117)
T 2yrv_A 30 PALVISPSCN 39 (117)
T ss_dssp EEEEECCSSC
T ss_pred EEEEECCCCC
T ss_conf 3588768877
No 3
>>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A (A:)
Probab=9.59 E-value=1.4e+02 Score=14.05 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=13.2
Q ss_pred CCEEECCHHEEEECCCC
Q ss_conf 74683522106641686
Q 537021.9.peg.5 3 PGLILSPSCFIHFANLP 19 (45)
Q Consensus 3 pglilspscfihfanlp 19 (45)
-|.|++++|++.|.+-|
T Consensus 91 g~~v~~~~C~lRYe~~~ 107 (108)
T 2e79_A 91 GARVQLVDCFIQYEQRS 107 (108)
T ss_dssp SEEEEESSEEEEEESSC
T ss_pred EEEEECCCEEEEEECCC
T ss_conf 59998799899996998
No 4
>>3k4i_A Uncharacterized protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, NYSGXRC,; 1.69A {Pseudomonas syringae PV} (A:)
Probab=8.38 E-value=1.8e+02 Score=13.61 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=9.6
Q ss_pred EEEEECCCCEEEE
Q ss_conf 2567077874999
Q 537021.9.peg.5 20 SVIVGDKEGIVIV 32 (45)
Q Consensus 20 svivgdkegiviv 32 (45)
.+|+||..|+|++
T Consensus 169 D~I~aD~dGVvvi 181 (244)
T 3k4i_A 169 DLXVCDGSGCVVV 181 (244)
T ss_dssp CEEEEETTEEEEE
T ss_pred CEEEECCCEEEEE
T ss_conf 6888769847997
No 5
>>1q5x_A Regulator of RNAse E activity A; 3-layer sandwich, alpha-beta structure, parallel beta sheet, antiparallel beta sheet, hydrolase inhibitor; 2.00A {Escherichia coli} (A:)
Probab=8.33 E-value=1.9e+02 Score=13.42 Aligned_cols=13 Identities=23% Similarity=0.555 Sum_probs=10.2
Q ss_pred EEEEECCCCEEEE
Q ss_conf 2567077874999
Q 537021.9.peg.5 20 SVIVGDKEGIVIV 32 (45)
Q Consensus 20 svivgdkegiviv 32 (45)
..|++|.+|++++
T Consensus 142 D~i~aD~dGvvvi 154 (161)
T 1q5x_A 142 DHLYADNTGIILS 154 (161)
T ss_dssp CEEEECSSCEEEE
T ss_pred CEEEEECCCEEEE
T ss_conf 9999929928998
No 6
>>3jyv_E 40S ribosomal protein S2; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_E (E:1-74)
Probab=8.23 E-value=2e+02 Score=13.40 Aligned_cols=15 Identities=47% Similarity=0.629 Sum_probs=11.2
Q ss_pred EEEEECCCCEEEEEE
Q ss_conf 256707787499984
Q 537021.9.peg.5 20 SVIVGDKEGIVIVCI 34 (45)
Q Consensus 20 svivgdkegivivci 34 (45)
-|++||..|.|=.-+
T Consensus 27 lvvvGn~~G~vG~G~ 41 (74)
T 3jyv_E 27 VVVVGDSNGHVGLGI 41 (74)
T ss_dssp EEEEECSSSEEEEEE
T ss_pred EEEEECCCCCCCEEE
T ss_conf 999952898674030
No 7
>>3c8o_A Regulator of ribonuclease activity A; RRAA, PAO1, RNAse E regulater, hydrolase regulator; HET: PGE PG4; 1.90A {Pseudomonas aeruginosa} (A:)
Probab=7.03 E-value=2.2e+02 Score=13.10 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=11.3
Q ss_pred CEEEEECCCCEEEEE
Q ss_conf 625670778749998
Q 537021.9.peg.5 19 PSVIVGDKEGIVIVC 33 (45)
Q Consensus 19 psvivgdkegivivc 33 (45)
-..|++|.+|++++-
T Consensus 141 GD~I~aD~dGvvVIP 155 (162)
T 3c8o_A 141 GEFVYADNNGIIVSP 155 (162)
T ss_dssp TSEEEECSSCEEEES
T ss_pred CCEEEEECCCEEEEC
T ss_conf 999999399499982
No 8
>>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A (A:1-67,A:154-193)
Probab=6.70 E-value=2e+02 Score=13.40 Aligned_cols=15 Identities=40% Similarity=0.751 Sum_probs=11.0
Q ss_pred EEECCCCEEEEECCC
Q ss_conf 664168625670778
Q 537021.9.peg.5 13 IHFANLPSVIVGDKE 27 (45)
Q Consensus 13 ihfanlpsvivgdke 27 (45)
+-|...|.||||.|-
T Consensus 64 Vd~~~~~~~~~~~~~ 78 (107)
T 3hz8_A 64 VVWQGVPTVIVGGKY 78 (107)
T ss_dssp CCCSSSSEEEETTTE
T ss_pred CCCCCCCEEEECCEE
T ss_conf 545628889998989
No 9
>>2h85_A Putative ORF1AB polyprotein; endoribonuclease, RNA, NSP, viral protein; 2.60A {Sars coronavirus} (A:1-66)
Probab=5.59 E-value=2.2e+02 Score=13.16 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=17.3
Q ss_pred HEEEE-CCCCEEEEECC----CCEEEEEEEEC
Q ss_conf 10664-16862567077----87499984213
Q 537021.9.peg.5 11 CFIHF-ANLPSVIVGDK----EGIVIVCIIIS 37 (45)
Q Consensus 11 cfihf-anlpsvivgdk----egivivciiis 37 (45)
||.+- ..||-+|++|| .|-+-+||...
T Consensus 16 hf~g~~GelP~aI~~dkV~~k~~~~d~~iF~N 47 (66)
T 2h85_A 16 HFDGHAGEAPVSIINNAVYTKVDGIDVEIFEN 47 (66)
T ss_dssp SCCCCCCCCCEEEETTEEEEEETTEEEEEEEC
T ss_pred CCCCCCCCCCEEEECCEEEEEECCCEEEEEEC
T ss_conf 65575786557998888999647805899964
No 10
>>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix K1} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A (A:1-147)
Probab=5.47 E-value=2.8e+02 Score=12.63 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=0.0
Q ss_pred CCEEEEECCCCEEE
Q ss_conf 86256707787499
Q 537021.9.peg.5 18 LPSVIVGDKEGIVI 31 (45)
Q Consensus 18 lpsvivgdkegivi 31 (45)
.|+.++-|++|.++
T Consensus 124 ~P~~~iiD~~G~I~ 137 (147)
T 3a2v_A 124 VRGVFIVDARGVIR 137 (147)
T ss_dssp CEEEEEECTTSBEE
T ss_pred CCEEEEECCCCEEE
T ss_conf 53369998999799
Done!