Query 537021.9.peg.574_1
Match_columns 51
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Tue May 24 21:40:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_574.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2046 MET3 ATP sulfurylase ( 57.1 7 0.00018 21.1 1.9 22 26-47 344-365 (397)
2 pfam11290 DUF3090 Protein of u 40.0 8.5 0.00022 20.6 0.1 28 21-48 132-161 (171)
3 KOG3322 consensus 35.3 15 0.00039 19.3 0.8 37 10-46 236-275 (688)
4 PRK04149 sat sulfate adenylylt 29.1 35 0.00088 17.5 1.8 23 25-47 346-368 (390)
5 TIGR00420 trmU tRNA (5-methyla 28.0 24 0.00061 18.3 0.8 35 16-51 74-113 (394)
6 PRK04220 2-phosphoglycerate ki 27.0 21 0.00054 18.6 0.4 27 17-43 3-34 (306)
7 pfam01747 ATP-sulfurylase ATP- 25.9 43 0.0011 17.0 1.8 22 26-47 277-298 (310)
8 COG2074 2-phosphoglycerate kin 25.1 35 0.0009 17.4 1.2 27 19-45 3-34 (299)
9 TIGR01677 pln_FAD_oxido plant- 21.8 24 0.00061 18.3 -0.1 16 4-19 481-496 (577)
10 cd00517 ATPS ATP-sulfurylase ( 21.4 58 0.0015 16.3 1.7 22 26-47 324-345 (356)
11 COG5197 Predicted membrane pro 20.4 42 0.0011 17.0 0.9 24 13-36 202-225 (284)
No 1
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=57.07 E-value=7 Score=21.05 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHHCCCCCCEEEE
Q ss_conf 0141889999960699843146
Q 537021.9.peg.5 26 KISMPFVHSMLRAGLRPPCIFC 47 (51)
Q Consensus 26 kismpfvhsmlraglrppcifc 47 (51)
.+|-..+..|||+|.+||-.|-
T Consensus 344 ~~SGt~lR~~Lr~G~~PP~~f~ 365 (397)
T COG2046 344 HISGTKLREMLRAGVKPPEEFS 365 (397)
T ss_pred EECCHHHHHHHHCCCCCCCCCC
T ss_conf 8741899999975788970136
No 2
>pfam11290 DUF3090 Protein of unknown function (DUF3090). This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=40.00 E-value=8.5 Score=20.63 Aligned_cols=28 Identities=29% Similarity=0.543 Sum_probs=15.1
Q ss_pred EEHHCCCCCHHHHHH--HHCCCCCCEEEEE
Q ss_conf 231020141889999--9606998431466
Q 537021.9.peg.5 21 IVLSKKISMPFVHSM--LRAGLRPPCIFCI 48 (51)
Q Consensus 21 ivlskkismpfvhsm--lraglrppcifci 48 (51)
+.++-.-..-|..-- +-+.=||||.||-
T Consensus 132 v~lt~~qa~aF~~ra~~VV~AGRp~Cp~Cg 161 (171)
T pfam11290 132 VRLTPGQARAFAKRARRVVAAGRPPCPLCG 161 (171)
T ss_pred EEECHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 997999999999999999966999999889
No 3
>KOG3322 consensus
Probab=35.32 E-value=15 Score=19.28 Aligned_cols=37 Identities=30% Similarity=0.282 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHEEHH---CCCCCHHHHHHHHCCCCCCEEE
Q ss_conf 578100416412310---2014188999996069984314
Q 537021.9.peg.5 10 NRNISFIPIIIIVLS---KKISMPFVHSMLRAGLRPPCIF 46 (51)
Q Consensus 10 nrnisfipiiiivls---kkismpfvhsmlraglrppcif 46 (51)
.-+.+||+.+|-..+ -..++|+.+|.|++|++|-|+-
T Consensus 236 ~~~~~fIk~li~~~si~r~~lig~~~~s~l~e~I~~v~~e 275 (688)
T KOG3322 236 GIRNSFIKSLIPWESIHRFRLIGPLSNSKLSEGIRPVFEE 275 (688)
T ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHCCCEEEEE
T ss_conf 5465113468861102321003531455665105154455
No 4
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=29.15 E-value=35 Score=17.46 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=19.8
Q ss_pred CCCCCHHHHHHHHCCCCCCEEEE
Q ss_conf 20141889999960699843146
Q 537021.9.peg.5 25 KKISMPFVHSMLRAGLRPPCIFC 47 (51)
Q Consensus 25 kkismpfvhsmlraglrppcifc 47 (51)
..||-..+..||++|..||-.|-
T Consensus 346 ~~iSGT~iR~~l~~G~~~P~~f~ 368 (390)
T PRK04149 346 VRLSGTKVREMLREGERPPPEFS 368 (390)
T ss_pred EEECHHHHHHHHHCCCCCCCCCC
T ss_conf 86379999999977898995447
No 5
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; InterPro: IPR004506 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (2.1.1.61 from EC) catalyses the addition of 5-methylaminomethyl-2-thiouridylate to tRNAs using S-adenosyl-L-methionine as a substrate and releasing S-adenosyl-L-homocysteine. The enzyme is cytoplasmic and is involved in tRNA processing.; GO: 0004808 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity, 0008033 tRNA processing, 0005737 cytoplasm.
Probab=28.00 E-value=24 Score=18.27 Aligned_cols=35 Identities=37% Similarity=0.749 Sum_probs=18.9
Q ss_pred HHHHHEEHHC----CCCCHHHHHHHHCCCCC-CEEEEEECC
Q ss_conf 4164123102----01418899999606998-431466429
Q 537021.9.peg.5 16 IPIIIIVLSK----KISMPFVHSMLRAGLRP-PCIFCIHRI 51 (51)
Q Consensus 16 ipiiiivlsk----kismpfvhsmlraglrp-pcifcihri 51 (51)
||..++-+.+ ++--||+.+ ..+|..| |||+|=.+|
T Consensus 74 i~l~~~nf~~~Y~~~Vf~~~i~~-y~~G~TPnPDi~CN~~i 113 (394)
T TIGR00420 74 IPLEKVNFQKEYWNKVFEPFIQE-YKEGLTPNPDILCNKLI 113 (394)
T ss_pred CCEEEECHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCC
T ss_conf 81898550788788888999998-73677778620047120
No 6
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=27.03 E-value=21 Score=18.55 Aligned_cols=27 Identities=44% Similarity=0.657 Sum_probs=20.2
Q ss_pred HHHHEEHHCCCCCHHH-----HHHHHCCCCCC
Q ss_conf 1641231020141889-----99996069984
Q 537021.9.peg.5 17 PIIIIVLSKKISMPFV-----HSMLRAGLRPP 43 (51)
Q Consensus 17 piiiivlskkismpfv-----hsmlraglrpp 43 (51)
-+.|+|-.||..|||. .|+..||+.|-
T Consensus 3 ~~~~~~~~~~~~~PFSrgil~rslt~~gi~~~ 34 (306)
T PRK04220 3 MIRITVKGKKYEMPFSKGILARSLTAAGMKPD 34 (306)
T ss_pred EEEEEECCCEEECCCHHHHHHHHHHHHCCCHH
T ss_conf 89999648511366318999999998089888
No 7
>pfam01747 ATP-sulfurylase ATP-sulfurylase. This family consists of ATP-sulfurylase or sulfate adenylyltransferase EC:2.7.7.4 some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase pfam01583. Both enzymes are required for PAPS (phosphoadenosine-phosphosulfate) synthesis from inorganic sulphate. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulfate APS from ATP and inorganic sulphate.
Probab=25.89 E-value=43 Score=16.95 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHCCCCCCEEEE
Q ss_conf 0141889999960699843146
Q 537021.9.peg.5 26 KISMPFVHSMLRAGLRPPCIFC 47 (51)
Q Consensus 26 kismpfvhsmlraglrppcifc 47 (51)
.||-..+..||++|..||..|-
T Consensus 277 ~isgt~iR~~L~~G~~~P~~f~ 298 (310)
T pfam01747 277 FISGTKLREMLREGEEPPEWFS 298 (310)
T ss_pred CCCHHHHHHHHHCCCCCCCCCC
T ss_conf 4178999999987798995668
No 8
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=25.09 E-value=35 Score=17.41 Aligned_cols=27 Identities=37% Similarity=0.586 Sum_probs=21.0
Q ss_pred HHEEHHCCCCCHH-----HHHHHHCCCCCCEE
Q ss_conf 4123102014188-----99999606998431
Q 537021.9.peg.5 19 IIIVLSKKISMPF-----VHSMLRAGLRPPCI 45 (51)
Q Consensus 19 iiivlskkismpf-----vhsmlraglrppci 45 (51)
-++|-+++.+||| +.|..+||+.|.--
T Consensus 3 ~v~~~g~~~~~PFSkGiL~rSlta~g~~p~~A 34 (299)
T COG2074 3 RVIVKGDKYEMPFSKGILARSLTAAGVDPDLA 34 (299)
T ss_pred CEEECCCCCCCCCCHHHHHHHHHHCCCCHHHH
T ss_conf 23754886657742007988888614682589
No 9
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase; InterPro: IPR010030 This entry identifies a family of uncharacterised plant-specific FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (1.3.2.3 from EC) from higher plants, D-arabinono-1,4-lactone oxidase (1.1.3.37 from EC) from Saccharomyces cerevisiae, and L-gulonolactone oxidase (1.1.3.8 from EC) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown..
Probab=21.84 E-value=24 Score=18.27 Aligned_cols=16 Identities=38% Similarity=0.783 Sum_probs=11.9
Q ss_pred HHHHCCCCCCCHHHHH
Q ss_conf 4642875781004164
Q 537021.9.peg.5 4 KEKYGKNRNISFIPII 19 (51)
Q Consensus 4 kekygknrnisfipii 19 (51)
+-.+|||||+.|.-.+
T Consensus 481 ~PHWGKNR~~AF~Gv~ 496 (577)
T TIGR01677 481 LPHWGKNRNLAFVGVK 496 (577)
T ss_pred CCCHHHHHHHHHHCCH
T ss_conf 6642443234321001
No 10
>cd00517 ATPS ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be a monomer, a hom
Probab=21.45 E-value=58 Score=16.28 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHCCCCCCEEEE
Q ss_conf 0141889999960699843146
Q 537021.9.peg.5 26 KISMPFVHSMLRAGLRPPCIFC 47 (51)
Q Consensus 26 kismpfvhsmlraglrppcifc 47 (51)
+||-..+..||++|..||-.|-
T Consensus 324 ~iSGt~iR~~L~~G~~pP~~f~ 345 (356)
T cd00517 324 NISGTKMREMLREGEKPPEWFM 345 (356)
T ss_pred ECCHHHHHHHHHCCCCCCCCCC
T ss_conf 5178999999977698996577
No 11
>COG5197 Predicted membrane protein [Function unknown]
Probab=20.36 E-value=42 Score=16.99 Aligned_cols=24 Identities=42% Similarity=0.870 Sum_probs=19.9
Q ss_pred CCHHHHHHEEHHCCCCCHHHHHHH
Q ss_conf 100416412310201418899999
Q 537021.9.peg.5 13 ISFIPIIIIVLSKKISMPFVHSML 36 (51)
Q Consensus 13 isfipiiiivlskkismpfvhsml 36 (51)
-.|.|.|..-|+|...||||...+
T Consensus 202 YKfV~liL~qL~k~~~Mp~v~~i~ 225 (284)
T COG5197 202 YKFVPLILAQLLKNVTMPFVLNIL 225 (284)
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHH
T ss_conf 320999999986405652788999
Done!