Query 537021.9.peg.574_1
Match_columns 51
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Tue May 24 22:55:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_574.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7la_ e.57.1.1 (A:) Vacuolar 14.9 45 0.0033 14.5 2.5 35 15-49 292-326 (388)
2 d1x6va2 c.26.1.5 (A:390-624) A 11.4 47 0.0034 14.4 1.5 23 25-47 195-217 (235)
3 d1qz8a_ b.140.1.1 (A:) Replica 9.5 51 0.0037 14.2 1.2 11 39-49 66-76 (111)
4 d1v47a2 c.26.1.5 (A:136-349) A 9.2 58 0.0043 13.9 1.4 22 26-47 181-202 (214)
5 d1sh0a_ e.8.1.4 (A:) Viral RNA 8.1 67 0.0049 13.6 1.3 41 4-44 167-210 (502)
6 d1cjaa_ d.144.1.3 (A:) Actin-f 5.7 95 0.0069 12.8 1.0 13 26-38 328-340 (342)
7 d1xr5a_ e.8.1.4 (A:) Viral RNA 5.3 1.1E+02 0.0082 12.4 1.7 39 6-44 169-208 (460)
8 d1ldda_ a.4.5.34 (A:) Anaphase 5.0 90 0.0066 12.9 0.5 24 15-38 9-34 (74)
9 d1nh9a_ d.68.6.1 (A:) DNA-bind 4.6 58 0.0043 13.9 -0.7 14 6-19 71-84 (87)
10 d1khva_ e.8.1.4 (A:) Viral RNA 4.3 1.3E+02 0.0095 12.1 0.9 39 6-44 179-217 (497)
No 1
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.87 E-value=45 Score=14.49 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=23.6
Q ss_pred HHHHHHEEHHCCCCCHHHHHHHHCCCCCCEEEEEE
Q ss_conf 04164123102014188999996069984314664
Q 537021.9.peg.5 15 FIPIIIIVLSKKISMPFVHSMLRAGLRPPCIFCIH 49 (51)
Q Consensus 15 fipiiiivlskkismpfvhsmlraglrppcifcih 49 (51)
|--+.+.-..-|.---||.|.||-||-|....|+-
T Consensus 292 fse~f~~wiHiKalRvFVESVLRYGLP~~F~~~li 326 (388)
T d1u7la_ 292 YVDVFINWFHIKALRVYVESVLRYGLPPHFNIKII 326 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 99999999998568766433453589834138999
No 2
>d1x6va2 c.26.1.5 (A:390-624) ATP sulfurylase catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.44 E-value=47 Score=14.41 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=19.1
Q ss_pred CCCCCHHHHHHHHCCCCCCEEEE
Q ss_conf 20141889999960699843146
Q 537021.9.peg.5 25 KKISMPFVHSMLRAGLRPPCIFC 47 (51)
Q Consensus 25 kkismpfvhsmlraglrppcifc 47 (51)
..||...+-.||+.|..||-.|-
T Consensus 195 ~~ISGT~iR~~L~~G~~iP~~f~ 217 (235)
T d1x6va2 195 EFISGTRMRKLAREGQKPPEGFM 217 (235)
T ss_dssp ECCCHHHHHHHHHTTCCCCTTSS
T ss_pred EEECHHHHHHHHHCCCCCCCCCC
T ss_conf 65268999999987498896688
No 3
>d1qz8a_ b.140.1.1 (A:) Replicase NSP9 {SARS coronavirus [TaxId: 227859]}
Probab=9.52 E-value=51 Score=14.18 Aligned_cols=11 Identities=45% Similarity=1.050 Sum_probs=8.6
Q ss_pred CCCCCEEEEEE
Q ss_conf 69984314664
Q 537021.9.peg.5 39 GLRPPCIFCIH 49 (51)
Q Consensus 39 glrppcifcih 49 (51)
.|.|||-|-+.
T Consensus 66 eLePPckF~v~ 76 (111)
T d1qz8a_ 66 ELEPPCRFVTD 76 (111)
T ss_dssp EBCCCEEEEEC
T ss_pred ECCCCCEEEEE
T ss_conf 02898498898
No 4
>d1v47a2 c.26.1.5 (A:136-349) ATP sulfurylase catalytic domain {Thermus thermophilus [TaxId: 274]}
Probab=9.22 E-value=58 Score=13.89 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHCCCCCCEEEE
Q ss_conf 0141889999960699843146
Q 537021.9.peg.5 26 KISMPFVHSMLRAGLRPPCIFC 47 (51)
Q Consensus 26 kismpfvhsmlraglrppcifc 47 (51)
.||...+-.||+.|..||-.|-
T Consensus 181 ~ISGT~iR~~L~~G~~~P~~f~ 202 (214)
T d1v47a2 181 AISMTKVRALLREGKAPPSELV 202 (214)
T ss_dssp ECCHHHHHHHHHTTCCCCTTTS
T ss_pred ECCHHHHHHHHHCCCCCCCCCC
T ss_conf 5078999999987599892467
No 5
>d1sh0a_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId: 11983]}
Probab=8.07 E-value=67 Score=13.57 Aligned_cols=41 Identities=10% Similarity=0.039 Sum_probs=32.0
Q ss_pred HHHH---CCCCCCCHHHHHHEEHHCCCCCHHHHHHHHCCCCCCE
Q ss_conf 4642---8757810041641231020141889999960699843
Q 537021.9.peg.5 4 KEKY---GKNRNISFIPIIIIVLSKKISMPFVHSMLRAGLRPPC 44 (51)
Q Consensus 4 keky---gknrnisfipiiiivlskkismpfvhsmlraglrppc 44 (51)
+||- ||.|.++-.|+-..++.++.-++|...+-......||
T Consensus 167 ~eKv~~~gKTR~f~~~p~~~~i~~R~~f~~f~~~~~~~~~~~~~ 210 (502)
T d1sh0a_ 167 TDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKTHCVTLPI 210 (502)
T ss_dssp THHHHSSCCCCEEEECCHHHHHHHHHHHHHHHHHHHHTTTTSSB
T ss_pred HHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 78755699825999798899999999999999999965788873
No 6
>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain {Physarum polycephalum [TaxId: 5791]}
Probab=5.74 E-value=95 Score=12.80 Aligned_cols=13 Identities=38% Similarity=0.741 Sum_probs=9.3
Q ss_pred CCCCHHHHHHHHC
Q ss_conf 0141889999960
Q 537021.9.peg.5 26 KISMPFVHSMLRA 38 (51)
Q Consensus 26 kismpfvhsmlra 38 (51)
++.|||.-+|||-
T Consensus 328 ~~~~~f~~~~~~~ 340 (342)
T d1cjaa_ 328 PQAIPFILRMLRI 340 (342)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHH
T ss_conf 2476089999985
No 7
>d1xr5a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 14, HRV-14 [TaxId: 12131]}
Probab=5.28 E-value=1.1e+02 Score=12.40 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=31.8
Q ss_pred HHCCCCCCCHHHHHHEEHHCCCCCHHHHHHHH-CCCCCCE
Q ss_conf 42875781004164123102014188999996-0699843
Q 537021.9.peg.5 6 KYGKNRNISFIPIIIIVLSKKISMPFVHSMLR-AGLRPPC 44 (51)
Q Consensus 6 kygknrnisfipiiiivlskkismpfvhsmlr-aglrppc 44 (51)
.-||.|-++..|.-..++.++.-++|...+.+ .+..+++
T Consensus 169 ~~gKtR~f~~~p~~~~i~~r~~~~~f~~~~~~~~~~~~~~ 208 (460)
T d1xr5a_ 169 RLGKSRLIEASSLNDSVNMRMKLGNLYKAFHQNPGVLTGS 208 (460)
T ss_dssp HTTCCCEEEECCHHHHHHHTTTSHHHHHHHHHCTBTTTTB
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 6899739997986999999999999999998669988883
No 8
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.95 E-value=90 Score=12.90 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=14.8
Q ss_pred HHHHHHEEHHCCCCCHH--HHHHHHC
Q ss_conf 04164123102014188--9999960
Q 537021.9.peg.5 15 FIPIIIIVLSKKISMPF--VHSMLRA 38 (51)
Q Consensus 15 fipiiiivlskkismpf--vhsmlra 38 (51)
|.|-|.-.|..--|||+ .|+||+-
T Consensus 9 ~w~yI~gMLtN~~slpleRIh~mLkm 34 (74)
T d1ldda_ 9 SLPFIEGMLTNLGAMKLHKIHSFLKI 34 (74)
T ss_dssp HHHHHHHHHHHHCSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99999999966787889999999998
No 9
>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.59 E-value=58 Score=13.89 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=8.6
Q ss_pred HHCCCCCCCHHHHH
Q ss_conf 42875781004164
Q 537021.9.peg.5 6 KYGKNRNISFIPII 19 (51)
Q Consensus 6 kygknrnisfipii 19 (51)
+-|+.|+.|.|.|.
T Consensus 71 ~~g~~r~VS~IeI~ 84 (87)
T d1nh9a_ 71 PDGREVNVSTIEIV 84 (87)
T ss_dssp ----CCCEEEEEEE
T ss_pred CCCCEEEEEEEEEE
T ss_conf 79955678899999
No 10
>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic disease virus [TaxId: 11976]}
Probab=4.26 E-value=1.3e+02 Score=12.08 Aligned_cols=39 Identities=15% Similarity=0.041 Sum_probs=29.2
Q ss_pred HHCCCCCCCHHHHHHEEHHCCCCCHHHHHHHHCCCCCCE
Q ss_conf 428757810041641231020141889999960699843
Q 537021.9.peg.5 6 KYGKNRNISFIPIIIIVLSKKISMPFVHSMLRAGLRPPC 44 (51)
Q Consensus 6 kygknrnisfipiiiivlskkismpfvhsmlraglrppc 44 (51)
+-||.|.|+-.|+...++.+..-.+|...+-.....-|+
T Consensus 179 ~~gKTR~f~~~p~~~~l~~r~~f~~~~~~~~~~~~~~p~ 217 (497)
T d1khva_ 179 KEGKKRLLWGCDVGVAVCAAAVFHNICYKLKMVARFGPI 217 (497)
T ss_dssp --CCCCEEEEECHHHHHHHHHHHHHHHHHHHHTTTTSSB
T ss_pred CCCCCEEEEECCCHHHEEEHHHHHHHHHHHHHCCCCCCC
T ss_conf 789914999568546143279745999999841678986
Done!