BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.574_1
         (51 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.574_1 
          Length = 51

 Score =  102 bits (255), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 51/51 (100%), Positives = 51/51 (100%)

Query: 1  MKYKEKYGKNRNISFIPIIIIVLSKKISMPFVHSMLRAGLRPPCIFCIHRI 51
          MKYKEKYGKNRNISFIPIIIIVLSKKISMPFVHSMLRAGLRPPCIFCIHRI
Sbjct: 1  MKYKEKYGKNRNISFIPIIIIVLSKKISMPFVHSMLRAGLRPPCIFCIHRI 51


>gi|254780137|ref|YP_003064550.1| malic enzyme [Candidatus Liberibacter asiaticus str. psy62]
          Length = 779

 Score = 21.2 bits (43), Expect = 3.2,   Method: Composition-based stats.
 Identities = 6/12 (50%), Positives = 11/12 (91%)

Query: 22  VLSKKISMPFVH 33
           +LS+K+ +PF+H
Sbjct: 164 ILSQKLKIPFLH 175


>gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 465

 Score = 20.8 bits (42), Expect = 5.1,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 5   EKYGKNRNISFIPII 19
           EKYGKN N++   +I
Sbjct: 93  EKYGKNYNLTVALLI 107


>gi|254781014|ref|YP_003065427.1| hypothetical protein CLIBASIA_04580 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 116

 Score = 20.0 bits (40), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 15 FIPIIIIVLSKKISMPFVHSMLRA 38
          +I +++IVLS   + PF+    + 
Sbjct: 10 WISVLLIVLSNVYAQPFLEETEKG 33


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.334    0.148    0.465 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,068
Number of Sequences: 1233
Number of extensions: 932
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 51
length of database: 328,796
effective HSP length: 24
effective length of query: 27
effective length of database: 299,204
effective search space:  8078508
effective search space used:  8078508
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 31 (16.5 bits)