RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.582_1
         (37 letters)



>gnl|CDD|180128 PRK05560, PRK05560, DNA gyrase subunit A; Validated.
          Length = 805

 Score = 25.4 bits (57), Expect = 3.6
 Identities = 4/16 (25%), Positives = 11/16 (68%)

Query: 1   MLRLHQIIKHFILFQE 16
           +L L +I++ F+  ++
Sbjct: 339 LLNLKEILEAFLEHRK 354


>gnl|CDD|180282 PRK05841, flgE, flagellar hook protein FlgE; Validated.
          Length = 603

 Score = 24.4 bits (53), Expect = 6.7
 Identities = 6/23 (26%), Positives = 7/23 (30%)

Query: 14  FQEKNAHFNQYISFSQDKIVIPS 36
                    + IS     I IPS
Sbjct: 335 LNANGMELKKGISRDSVAIKIPS 357


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.331    0.142    0.410 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 590,312
Number of extensions: 17879
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 4
Length of query: 37
Length of database: 5,994,473
Length adjustment: 11
Effective length of query: 26
Effective length of database: 5,756,785
Effective search space: 149676410
Effective search space used: 149676410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.2 bits)