RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.582_1 (37 letters) >gnl|CDD|180128 PRK05560, PRK05560, DNA gyrase subunit A; Validated. Length = 805 Score = 25.4 bits (57), Expect = 3.6 Identities = 4/16 (25%), Positives = 11/16 (68%) Query: 1 MLRLHQIIKHFILFQE 16 +L L +I++ F+ ++ Sbjct: 339 LLNLKEILEAFLEHRK 354 >gnl|CDD|180282 PRK05841, flgE, flagellar hook protein FlgE; Validated. Length = 603 Score = 24.4 bits (53), Expect = 6.7 Identities = 6/23 (26%), Positives = 7/23 (30%) Query: 14 FQEKNAHFNQYISFSQDKIVIPS 36 + IS I IPS Sbjct: 335 LNANGMELKKGISRDSVAIKIPS 357 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.331 0.142 0.410 Gapped Lambda K H 0.267 0.0662 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 590,312 Number of extensions: 17879 Number of successful extensions: 53 Number of sequences better than 10.0: 1 Number of HSP's gapped: 53 Number of HSP's successfully gapped: 4 Length of query: 37 Length of database: 5,994,473 Length adjustment: 11 Effective length of query: 26 Effective length of database: 5,756,785 Effective search space: 149676410 Effective search space used: 149676410 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 50 (23.2 bits)