RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.593_1 (38 letters) >gnl|CDD|118036 pfam09499, RE_ApaLI, ApaLI-like restriction endonuclease. This family includes R.ApaLI and R.XbaI restriction endonucleases. ApaLI recognizes and cleaves the sequence GTGCAC. Length = 191 Score = 26.7 bits (59), Expect = 1.5 Identities = 8/12 (66%), Positives = 8/12 (66%) Query: 15 LIVMVQNTPRFL 26 LI M QN RFL Sbjct: 51 LIDMYQNKGRFL 62 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.341 0.154 0.450 Gapped Lambda K H 0.267 0.0612 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 609,603 Number of extensions: 19863 Number of successful extensions: 76 Number of sequences better than 10.0: 1 Number of HSP's gapped: 76 Number of HSP's successfully gapped: 3 Length of query: 38 Length of database: 5,994,473 Length adjustment: 12 Effective length of query: 26 Effective length of database: 5,735,177 Effective search space: 149114602 Effective search space used: 149114602 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.9 bits) S2: 50 (23.3 bits)