RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.593_1
         (38 letters)



>gnl|CDD|118036 pfam09499, RE_ApaLI, ApaLI-like restriction endonuclease.  This
          family includes R.ApaLI and R.XbaI restriction
          endonucleases. ApaLI recognizes and cleaves the
          sequence GTGCAC.
          Length = 191

 Score = 26.7 bits (59), Expect = 1.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)

Query: 15 LIVMVQNTPRFL 26
          LI M QN  RFL
Sbjct: 51 LIDMYQNKGRFL 62


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.341    0.154    0.450 

Gapped
Lambda     K      H
   0.267   0.0612    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 609,603
Number of extensions: 19863
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 3
Length of query: 38
Length of database: 5,994,473
Length adjustment: 12
Effective length of query: 26
Effective length of database: 5,735,177
Effective search space: 149114602
Effective search space used: 149114602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 50 (23.3 bits)