Query 537021.9.peg.598_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 00:37:15 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_598.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1rz4_A Eukaryotic translation 13.2 27 0.00079 17.7 -1.3 21 2-22 15-35 (155) 2 >1q20_A SULT2B1B, sulfotransfe 11.5 38 0.0011 17.0 -0.9 12 8-19 16-27 (29) 3 >2eu9_A Dual specificity prote 9.9 48 0.0014 16.5 -0.9 18 5-22 2-19 (43) 4 >1q1q_A SULT2B1A, sulfotransfe 8.5 58 0.0017 16.1 -0.9 12 8-19 29-40 (42) 5 >3kvc_A Retinoid isomerohydrol 5.8 1.5E+02 0.0045 14.1 0.1 10 13-22 10-19 (178) 6 >1muk_A Minor core protein lam 5.5 64 0.0019 15.9 -1.9 19 16-34 45-63 (109) 7 >3cb4_D GTP-binding protein LE 5.1 1.6E+02 0.0046 14.0 -0.2 13 25-37 35-47 (121) 8 >1u6g_C TIP120 protein, CAND1; 4.6 1E+02 0.003 15.0 -1.5 21 2-22 15-35 (82) 9 >3kvc_A Retinoid isomerohydrol 4.3 2.6E+02 0.0077 13.0 0.5 10 12-21 97-106 (113) 10 >2qnt_A AGR_C_3434P, uncharact 4.2 3.3E+02 0.0099 12.4 1.0 30 6-35 35-64 (68) No 1 >>1rz4_A Eukaryotic translation initiation factor 3 subunit 11; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} (A:1-127,A:199-226) Probab=13.24 E-value=27 Score=17.75 Aligned_cols=21 Identities=43% Similarity=0.578 Sum_probs=16.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCC Q ss_conf 752013881002110020142 Q 537021.9.peg.5 2 LNSAAHDNPENLSMTENYVIP 22 (38) Q Consensus 2 lnsaahdnpenlsmtenyvip 22 (38) |++...-|||||..-|+||-- T Consensus 15 L~gidRYNPenL~~LE~YV~~ 35 (155) T 1rz4_A 15 LKGIDRYNPENLATLERYVET 35 (155) T ss_dssp HHSGGGGCGGGHHHHHHHHHH T ss_pred HHCCCCCCHHHHHHHHHHHHH T ss_conf 837433787888999999999 No 2 >>1q20_A SULT2B1B, sulfotransferase family, cytosolic, 2B, member 1 isoform B; pregnenolone, cholesterol, PAP; HET: A3P PLO; 2.30A {Homo sapiens} (A:16-44) Probab=11.47 E-value=38 Score=16.99 Aligned_cols=12 Identities=33% Similarity=0.396 Sum_probs=9.1 Q ss_pred CCCCCCCCCCCC Q ss_conf 881002110020 Q 537021.9.peg.5 8 DNPENLSMTENY 19 (38) Q Consensus 8 dnpenlsmteny 19 (38) -.||.+||.||- T Consensus 16 yspesis~aen~ 27 (29) T 1q20_A 16 YSLESISLAENT 27 (29) T ss_dssp BCHHHHHHHHHC T ss_pred CCHHHHHHHHHC T ss_conf 899999999956 No 3 >>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2exe_A (A:239-281) Probab=9.94 E-value=48 Score=16.53 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=14.3 Q ss_pred CCCCCCCCCCCCCCCCCC Q ss_conf 013881002110020142 Q 537021.9.peg.5 5 AAHDNPENLSMTENYVIP 22 (38) Q Consensus 5 aahdnpenlsmtenyvip 22 (38) ..|||-|.|.|-|.-.-| T Consensus 2 qTHdnlEHLAMMErvlGp 19 (43) T 2eu9_A 2 QTHENREHLVMMEKILGP 19 (43) T ss_dssp CCSSHHHHHHHHHHHHCC T ss_pred CCCCHHHHHHHHHHHCCC T ss_conf 657778887767661478 No 4 >>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens} (A:1-42) Probab=8.49 E-value=58 Score=16.13 Aligned_cols=12 Identities=33% Similarity=0.396 Sum_probs=8.6 Q ss_pred CCCCCCCCCCCC Q ss_conf 881002110020 Q 537021.9.peg.5 8 DNPENLSMTENY 19 (38) Q Consensus 8 dnpenlsmteny 19 (38) -.||.+||.||- T Consensus 29 YspESis~aEN~ 40 (42) T 1q1q_A 29 YSLESISLAENT 40 (42) T ss_dssp BCHHHHHHHHHC T ss_pred CCHHHHHHHHHC T ss_conf 899999999856 No 5 >>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A (A:234-411) Probab=5.76 E-value=1.5e+02 Score=14.07 Aligned_cols=10 Identities=30% Similarity=0.707 Sum_probs=7.0 Q ss_pred CCCCCCCCCC Q ss_conf 2110020142 Q 537021.9.peg.5 13 LSMTENYVIP 22 (38) Q Consensus 13 lsmtenyvip 22 (38) ..|||||+|= T Consensus 10 f~iTeny~V~ 19 (178) T 3kvc_A 10 FGLTPNYIVF 19 (178) T ss_dssp CEECSSEEEE T ss_pred EEECCCEEEE T ss_conf 6511766899 No 6 >>1muk_A Minor core protein lambda 3; single subunit polymerase fold, fingers, PALM, thumb, right hand configuration, viral protein; 2.50A {Reovirus SP} (A:60-148,A:203-222) Probab=5.52 E-value=64 Score=15.90 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=14.2 Q ss_pred CCCCCCCHHHHHHHHHHHH Q ss_conf 0020142177999998655 Q 537021.9.peg.5 16 TENYVIPHYGVLKEIISRH 34 (38) Q Consensus 16 tenyviphygvlkeiisrh 34 (38) +--..||.||-|.++|+.. T Consensus 45 sPl~tip~YG~L~~~Ie~d 63 (109) T 1muk_A 45 EPHETLTSYGRLSEAIENR 63 (109) T ss_dssp EECSSCTTEEEECHHHHHH T ss_pred CHHHCCCCCCCCCHHHHCC T ss_conf 4222167655106634234 No 7 >>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, periplasm, translation; 2.80A {Escherichia coli K12} PDB: 3deg_C* (D:479-599) Probab=5.13 E-value=1.6e+02 Score=14.04 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=9.7 Q ss_pred HHHHHHHHHHHCC Q ss_conf 7999998655305 Q 537021.9.peg.5 25 GVLKEIISRHKFS 37 (38) Q Consensus 25 gvlkeiisrhkfs 37 (38) .-|||+|.|+-|. T Consensus 35 ~kLKe~IPrq~fe 47 (121) T 3cb4_D 35 EKMKDLIPRQQFD 47 (121) T ss_dssp HHHHHHSCSCSSC T ss_pred HHHHHCCCCCCCC T ss_conf 6325318744304 No 8 >>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} (C:1016-1097) Probab=4.56 E-value=1e+02 Score=14.96 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=12.9 Q ss_pred CCCCCCCCCCCCCCCCCCCCC Q ss_conf 752013881002110020142 Q 537021.9.peg.5 2 LNSAAHDNPENLSMTENYVIP 22 (38) Q Consensus 2 lnsaahdnpenlsmtenyvip 22 (38) ||||+|..|.-+.-.-+-+.| T Consensus 15 lnsa~hnkp~li~~~l~~iLP 35 (82) T 1u6g_C 15 FNSAAHNKPSLIRDLLDTVLP 35 (82) T ss_dssp HHHHHHHCGGGTGGGHHHHHH T ss_pred HHHHHHHCHHHHHHHHHHHHH T ss_conf 999998586889999999988 No 9 >>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A (A:121-233) Probab=4.32 E-value=2.6e+02 Score=12.95 Aligned_cols=10 Identities=0% Similarity=0.232 Sum_probs=6.7 Q ss_pred CCCCCCCCCC Q ss_conf 0211002014 Q 537021.9.peg.5 12 NLSMTENYVI 21 (38) Q Consensus 12 nlsmtenyvi 21 (38) ...+||||+| T Consensus 97 dfaiTe~y~V 106 (113) T 3kvc_A 97 EDPISKSEIV 106 (113) T ss_dssp CCGGGGCEEE T ss_pred ECCCCCEEEE T ss_conf 0466750378 No 10 >>2qnt_A AGR_C_3434P, uncharacterized protein ATU1872; glyoxalase/bleomycin resistance protein/dioxygenase family related protein, PSI-2; HET: MSE EPE; 1.40A {Agrobacterium tumefaciens str} (A:1-68) Probab=4.21 E-value=3.3e+02 Score=12.44 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=23.6 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 138810021100201421779999986553 Q 537021.9.peg.5 6 AHDNPENLSMTENYVIPHYGVLKEIISRHK 35 (38) Q Consensus 6 ahdnpenlsmtenyviphygvlkeiisrhk 35 (38) -.|+-+|.++++..+|-.-...++.|.+.. T Consensus 35 i~D~G~NV~f~~GfaLQ~~~~w~~~i~~~~ 64 (68) T 2qnt_A 35 LEDFGSFVLFETGFAIHEGRSLEETIWRTS 64 (68) T ss_dssp EEECSSEEEETTSCEEEEHHHHHHHHHSCC T ss_pred EEECCCCEEEEEEEEECCCCCHHHHCCCCC T ss_conf 985587304554432214530122202467 Done!