RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.598_1
         (38 letters)



>gnl|CDD|185002 PRK15042, pduD, propanediol dehydratase medium subunit;
          Provisional.
          Length = 219

 Score = 25.8 bits (57), Expect = 2.8
 Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)

Query: 13 LSMTENYV-IPHYGVLKEIIS 32
          L+ T+  V IPH  +L+E+I+
Sbjct: 68 LAQTKTIVGIPHKEILREVIA 88


>gnl|CDD|178562 PLN02981, PLN02981, glucosamine:fructose-6-phosphate
           aminotransferase.
          Length = 680

 Score = 25.5 bits (56), Expect = 3.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 18  NYVIPHYGVLKEIISRHKF 36
           N +I +Y VLKE + RH F
Sbjct: 122 NGIITNYEVLKETLLRHGF 140


>gnl|CDD|177599 PHA03361, PHA03361, UL7 tegument protein; Provisional.
          Length = 302

 Score = 24.2 bits (53), Expect = 7.6
 Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 7/31 (22%)

Query: 1   LLN---SAAHDNPENLSMTENYVIPHYGVLK 28
           LLN        +P      +  V+PHY + K
Sbjct: 198 LLNTLMFMVDLSP----FDDERVLPHYAMAK 224


>gnl|CDD|183895 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
          Length = 800

 Score = 24.4 bits (54), Expect = 7.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 16  TENYVIPHYGVLKEIISRHKF 36
           TE  V  +YG+ K+ ISR +F
Sbjct: 91  TERKVEKYYGIRKDDISREEF 111


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.314    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0638    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 606,522
Number of extensions: 18046
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 7
Length of query: 38
Length of database: 5,994,473
Length adjustment: 12
Effective length of query: 26
Effective length of database: 5,735,177
Effective search space: 149114602
Effective search space used: 149114602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.2 bits)