Query 537021.9.peg.60_1 Match_columns 44 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Sun May 22 23:56:36 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_60.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2f2f_C CDT C, cytolethal diste 45.8 3.5 0.00015 21.1 0.0 24 17-43 1-24 (186) 2 2esy_A LUNG surfactant protein 21.7 21 0.00087 17.4 0.6 15 12-26 17-31 (32) 3 1spf_A Pulmonary surfactant-as 21.2 24 0.001 17.1 0.8 13 13-25 6-18 (35) 4 3kdf_D Replication protein A 3 9.2 88 0.0037 14.4 1.0 13 10-22 4-16 (132) 5 1ny8_A Protein YRBA; structure 8.8 1.1E+02 0.0045 14.0 1.3 27 12-38 6-32 (97) 6 1emx_A HPTX2, heteropodatoxin 5.5 1.2E+02 0.005 13.8 0.2 11 30-40 5-15 (30) 7 1fft_B Ubiquinol oxidase; elec 4.6 1.3E+02 0.0056 13.6 0.0 21 17-37 7-27 (315) 8 2pi2_A Replication protein A 3 4.5 2.3E+02 0.0096 12.5 1.1 14 10-23 44-57 (270) 9 3fau_A NEDD4-binding protein 2 4.0 1.9E+02 0.0081 12.8 0.4 16 28-43 36-51 (82) 10 3gbw_A E3 ubiquitin-protein li 3.8 1.9E+02 0.0081 12.8 0.3 15 28-42 107-121 (164) No 1 >2f2f_C CDT C, cytolethal distending toxin C; actinobacillus actinomycetemcomitans, oligomerization, stability and toxic activity; 2.40A {Aggregatibacter actinomycetemcomitans} SCOP: b.42.2.1 Probab=45.82 E-value=3.5 Score=21.06 Aligned_cols=24 Identities=38% Similarity=0.438 Sum_probs=17.9 Q ss_pred HHHHHHHHHHHCCCEEECCCCCCCCCC Q ss_conf 567787766401100103334678877 Q 537021.9.peg.6 17 IKKLLIVSLLSSTAIISGCDSHSGDGV 43 (44) Q Consensus 17 ikkllivsllsstaiisgcdshsgdgv 43 (44) .||.||+-+++ +|.+|+||.+.+. T Consensus 1 mkK~~i~f~~~---l~~~~~s~~~~~~ 24 (186) T 2f2f_C 1 MKKYLLSFLLS---MILTLTSHAESNP 24 (186) T ss_dssp --------------------------- T ss_pred CCHHHHHHHHH---HHHHCCCCCCCCC T ss_conf 93248999999---9975114554688 No 2 >2esy_A LUNG surfactant protein C; lipid binding protein; NMR {Synthetic} Probab=21.71 E-value=21 Score=17.41 Aligned_cols=15 Identities=53% Similarity=0.946 Sum_probs=12.2 Q ss_pred EEECCHHHHHHHHHH Q ss_conf 100025677877664 Q 537021.9.peg.6 12 IIPVNIKKLLIVSLL 26 (44) Q Consensus 12 iipvnikkllivsll 26 (44) -.|++.|.|||.-|| T Consensus 17 ccP~~LKRllillll 31 (32) T 2esy_A 17 FFPVHLKRLLILLLL 31 (32) T ss_dssp STHHHHHHHHHHHHC T ss_pred CCCHHHHHHHHHHHC T ss_conf 255069999999960 No 3 >1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1 Probab=21.15 E-value=24 Score=17.12 Aligned_cols=13 Identities=54% Similarity=0.966 Sum_probs=10.3 Q ss_pred EECCHHHHHHHHH Q ss_conf 0002567787766 Q 537021.9.peg.6 13 IPVNIKKLLIVSL 25 (44) Q Consensus 13 ipvnikkllivsl 25 (44) -|||.|.||.|-. T Consensus 6 cpvnlkrllvvvv 18 (35) T 1spf_A 6 CPVNLKRLLVVVV 18 (35) T ss_dssp SCSHHHHHHHHHH T ss_pred CCCCHHHHHHHHH T ss_conf 6306999987620 No 4 >3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} PDB: 2pqa_A 1quq_A 1l1o_B Probab=9.22 E-value=88 Score=14.43 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=10.1 Q ss_pred CCEEECCHHHHHH Q ss_conf 1110002567787 Q 537021.9.peg.6 10 ERIIPVNIKKLLI 22 (44) Q Consensus 10 eriipvnikklli 22 (44) +.++||+||.++- T Consensus 4 q~i~PvtI~ql~~ 16 (132) T 3kdf_D 4 QHIVPCTISQLLS 16 (132) T ss_dssp -CCEECCHHHHHT T ss_pred CCEEEEEHHHHHC T ss_conf 6227069999741 No 5 >1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1 Probab=8.78 E-value=1.1e+02 Score=14.04 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=19.3 Q ss_pred EEECCHHHHHHHHHHHCCCEEECCCCC Q ss_conf 100025677877664011001033346 Q 537021.9.peg.6 12 IIPVNIKKLLIVSLLSSTAIISGCDSH 38 (44) Q Consensus 12 iipvnikkllivsllsstaiisgcdsh 38 (44) +.+-.|+++|.-.+-.+..-+.||++| T Consensus 6 M~~~eI~~~L~~~l~~~~v~V~g~gsH 32 (97) T 1ny8_A 6 MENNEIQSVLMNALSLQEVHVSGDGSH 32 (97) T ss_dssp CCCHHHHHHHHHHHCCSEEEEEESSSE T ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCE T ss_conf 789999999995399718999689838 No 6 >1emx_A HPTX2, heteropodatoxin 2; NMR {Heteropoda venatoria} SCOP: g.3.6.2 Probab=5.55 E-value=1.2e+02 Score=13.80 Aligned_cols=11 Identities=36% Similarity=0.978 Sum_probs=7.8 Q ss_pred CEEECCCCCCC Q ss_conf 00103334678 Q 537021.9.peg.6 30 AIISGCDSHSG 40 (44) Q Consensus 30 aiisgcdshsg 40 (44) ...||||.|.. T Consensus 5 ~lfsgc~t~ad 15 (30) T 1emx_A 5 KLFSGCDTNAD 15 (30) T ss_dssp CTTCTTCSTTC T ss_pred CCCCCCCCCHH T ss_conf 22237778632 No 7 >1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1 Probab=4.63 E-value=1.3e+02 Score=13.56 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=14.8 Q ss_pred HHHHHHHHHHHCCCEEECCCC Q ss_conf 567787766401100103334 Q 537021.9.peg.6 17 IKKLLIVSLLSSTAIISGCDS 37 (44) Q Consensus 17 ikkllivsllsstaiisgcds 37 (44) .|-+...+++.++..++||+. T Consensus 7 ~r~l~~l~ll~~~~lLsGC~~ 27 (315) T 1fft_B 7 NKSLGWLSLFAGTVLLSGCNS 27 (315) T ss_dssp --------------------C T ss_pred HHHHHHHHHHHHHHHHHHCCC T ss_conf 789999999999999965765 No 8 >2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxane, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A Probab=4.46 E-value=2.3e+02 Score=12.46 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=10.1 Q ss_pred CCEEECCHHHHHHH Q ss_conf 11100025677877 Q 537021.9.peg.6 10 ERIIPVNIKKLLIV 23 (44) Q Consensus 10 eriipvnikklliv 23 (44) +.++||.||.++-- T Consensus 44 ~~l~PvtIkqi~~a 57 (270) T 2pi2_A 44 QHIVPCTISQLLSA 57 (270) T ss_dssp CCCEECCHHHHHHC T ss_pred CCEEEEEHHHHHHC T ss_conf 85631789998617 No 9 >3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} Probab=4.04 E-value=1.9e+02 Score=12.81 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=12.4 Q ss_pred CCCEEECCCCCCCCCC Q ss_conf 1100103334678877 Q 537021.9.peg.6 28 STAIISGCDSHSGDGV 43 (44) Q Consensus 28 staiisgcdshsgdgv 43 (44) .--||.|.-.||.+|. T Consensus 36 ~l~IItG~G~hS~~g~ 51 (82) T 3fau_A 36 YLSVITGRGNHSQGGV 51 (82) T ss_dssp EEEEECCC-------- T ss_pred EEEEEECCCCCCCCCC T ss_conf 7999969776899996 No 10 >3gbw_A E3 ubiquitin-protein ligase mycbp2; MYC-binding protein 2, protein associated with MYC, PAM, RPM-1, PHR domain, structural genomics, PSI-2; HET: MSE; 1.32A {Mus musculus} Probab=3.78 E-value=1.9e+02 Score=12.81 Aligned_cols=15 Identities=33% Similarity=0.341 Sum_probs=11.0 Q ss_pred CCCEEECCCCCCCCC Q ss_conf 110010333467887 Q 537021.9.peg.6 28 STAIISGCDSHSGDG 42 (44) Q Consensus 28 staiisgcdshsgdg 42 (44) -.|.+.|++|+.|++ T Consensus 107 ~~a~~~G~~S~~G~~ 121 (164) T 3gbw_A 107 AWARVSGPSSDCGSH 121 (164) T ss_dssp EEEEEESSCBCCEEE T ss_pred EEEEECCCCCCCCCC T ss_conf 999968996556679 Done!