Query 537021.9.peg.60_1 Match_columns 44 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Sun May 22 23:16:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_60.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1emxa_ g.3.6.2 (A:) Heteropda 12.0 25 0.0018 15.9 0.2 11 30-40 5-15 (30) 2 d2pi2a1 b.40.4.3 (A:44-171) Re 8.8 55 0.004 14.3 1.1 13 10-22 1-13 (128) 3 d1ny8a_ d.52.6.1 (A:) Hypothet 6.8 85 0.0062 13.4 1.3 29 10-38 4-32 (97) 4 d2d9ia1 d.68.8.1 (A:8-90) Nedd 5.4 1E+02 0.0075 13.0 1.1 17 27-43 36-52 (83) 5 d1ofda3 d.153.1.1 (A:1-430) Al 3.1 1.8E+02 0.013 11.8 0.8 11 33-43 34-44 (430) 6 d1ea0a3 d.153.1.1 (A:1-422) Al 2.1 2.6E+02 0.019 11.1 0.9 10 34-43 35-44 (422) 7 d1t64a_ c.42.1.2 (A:) Histone 1.7 3E+02 0.022 10.7 1.0 11 31-41 249-259 (364) 8 d1c3pa_ c.42.1.2 (A:) HDAC hom 1.6 3.2E+02 0.023 10.6 1.0 11 31-41 252-262 (372) 9 d1b43a1 a.60.7.1 (A:220-339) F 1.5 2.8E+02 0.02 10.9 -0.2 11 30-40 10-21 (120) 10 d2gz1a2 d.81.1.1 (A:128-329) A 1.5 3.3E+02 0.024 10.5 0.2 5 2-6 27-31 (202) No 1 >d1emxa_ g.3.6.2 (A:) Heteropdatoxin 2, hptx2 {Giant crab spider (Heteropoda venatoria) [TaxId: 152925]} Probab=12.00 E-value=25 Score=15.91 Aligned_cols=11 Identities=36% Similarity=0.978 Sum_probs=8.1 Q ss_pred CEEECCCCCCC Q ss_conf 00103334678 Q 537021.9.peg.6 30 AIISGCDSHSG 40 (44) Q Consensus 30 aiisgcdshsg 40 (44) ...||||+|.. T Consensus 5 ~lfsgc~t~ad 15 (30) T d1emxa_ 5 KLFSGCDTNAD 15 (30) T ss_dssp CTTCTTCSTTC T ss_pred CCCCCCCCCCC T ss_conf 50236778710 No 2 >d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]} Probab=8.82 E-value=55 Score=14.27 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=9.9 Q ss_pred CCEEECCHHHHHH Q ss_conf 1110002567787 Q 537021.9.peg.6 10 ERIIPVNIKKLLI 22 (44) Q Consensus 10 eriipvnikklli 22 (44) +.|+||.||.++- T Consensus 1 q~i~PvtI~ql~~ 13 (128) T d2pi2a1 1 QHIVPCTISQLLS 13 (128) T ss_dssp CCCEECCHHHHHH T ss_pred CCEEEEEHHHHHC T ss_conf 9464189999860 No 3 >d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]} Probab=6.83 E-value=85 Score=13.36 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=19.3 Q ss_pred CCEEECCHHHHHHHHHHHCCCEEECCCCC Q ss_conf 11100025677877664011001033346 Q 537021.9.peg.6 10 ERIIPVNIKKLLIVSLLSSTAIISGCDSH 38 (44) Q Consensus 10 eriipvnikkllivsllsstaiisgcdsh 38 (44) +...+-.|+.+|.-.+-.+..-+.||++| T Consensus 4 ~~M~~~eI~~~L~~~l~~~~v~V~g~g~h 32 (97) T d1ny8a_ 4 DPMENNEIQSVLMNALSLQEVHVSGDGSH 32 (97) T ss_dssp CCCCCHHHHHHHHHHHCCSEEEEEESSSE T ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCCCE T ss_conf 76889999999995399748999579857 No 4 >d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Probab=5.38 E-value=1e+02 Score=12.97 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=13.0 Q ss_pred HCCCEEECCCCCCCCCC Q ss_conf 01100103334678877 Q 537021.9.peg.6 27 SSTAIISGCDSHSGDGV 43 (44) Q Consensus 27 sstaiisgcdshsgdgv 43 (44) ..--||.|.-.||.+|. T Consensus 36 ~~l~IItG~G~hS~~g~ 52 (83) T d2d9ia1 36 PYLSVITGRGNHSQGGV 52 (83) T ss_dssp SEEEEECCCSGGGTTCT T ss_pred EEEEEEECCCCCCCCCC T ss_conf 07999979877789996 No 5 >d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]} Probab=3.14 E-value=1.8e+02 Score=11.84 Aligned_cols=11 Identities=45% Similarity=0.824 Sum_probs=6.6 Q ss_pred ECCCCCCCCCC Q ss_conf 03334678877 Q 537021.9.peg.6 33 SGCDSHSGDGV 43 (44) Q Consensus 33 sgcdshsgdgv 43 (44) .|||..+|||. T Consensus 34 ~gaD~~tGDGA 44 (430) T d1ofda3 34 CSADNDSGDGA 44 (430) T ss_dssp BCTTSSSBSCE T ss_pred CCCCCCCCCCE T ss_conf 57889985601 No 6 >d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]} Probab=2.11 E-value=2.6e+02 Score=11.09 Aligned_cols=10 Identities=40% Similarity=0.860 Sum_probs=5.3 Q ss_pred CCCCCCCCCC Q ss_conf 3334678877 Q 537021.9.peg.6 34 GCDSHSGDGV 43 (44) Q Consensus 34 gcdshsgdgv 43 (44) |||..+|||. T Consensus 35 gaD~~tGDGA 44 (422) T d1ea0a3 35 DADGKTGDGA 44 (422) T ss_dssp CTTSSCCSCB T ss_pred CCCCCCCCCC T ss_conf 7889987701 No 7 >d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Probab=1.71 E-value=3e+02 Score=10.74 Aligned_cols=11 Identities=36% Similarity=0.676 Sum_probs=0.0 Q ss_pred EEECCCCCCCC Q ss_conf 01033346788 Q 537021.9.peg.6 31 IISGCDSHSGD 41 (44) Q Consensus 31 iisgcdshsgd 41 (44) +-.|+|+|.+| T Consensus 249 vsaG~D~~~~D 259 (364) T d1t64a_ 249 LQLGADTIAGD 259 (364) T ss_dssp EECCSTTBTTC T ss_pred EECCCCCCCCC T ss_conf 98971477899 No 8 >d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Probab=1.62 E-value=3.2e+02 Score=10.64 Aligned_cols=11 Identities=27% Similarity=0.302 Sum_probs=0.0 Q ss_pred EEECCCCCCCC Q ss_conf 01033346788 Q 537021.9.peg.6 31 IISGCDSHSGD 41 (44) Q Consensus 31 iisgcdshsgd 41 (44) +-.|+|+|.+| T Consensus 252 vsaG~D~~~~D 262 (372) T d1c3pa_ 252 LQLGTDPLLED 262 (372) T ss_dssp EECCSTTBTTC T ss_pred EECCCCCCCCC T ss_conf 97881667768 No 9 >d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=1.50 E-value=2.8e+02 Score=10.92 Aligned_cols=11 Identities=45% Similarity=0.767 Sum_probs=0.0 Q ss_pred CEEECCCCC-CC Q ss_conf 001033346-78 Q 537021.9.peg.6 30 AIISGCDSH-SG 40 (44) Q Consensus 30 aiisgcdsh-sg 40 (44) +|..|||-. .| T Consensus 10 ~iL~G~DY~~~g 21 (120) T d1b43a1 10 AILVGTDYNPGG 21 (120) T ss_dssp HHHHCCTTSTTC T ss_pred HHHHCCCCCCCC T ss_conf 999577788656 No 10 >d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} Probab=1.49 E-value=3.3e+02 Score=10.53 Aligned_cols=5 Identities=100% Similarity=1.232 Sum_probs=0.0 Q ss_pred CHHHH Q ss_conf 30122 Q 537021.9.peg.6 2 YQAVS 6 (44) Q Consensus 2 yqavs 6 (44) |||+| T Consensus 27 yQAvS 31 (202) T d2gz1a2 27 YQAVS 31 (202) T ss_dssp EBCGG T ss_pred HHHHH T ss_conf 47577 Done!