Query         537021.9.peg.60_1
Match_columns 44
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Sun May 22 23:16:16 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_60.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1emxa_ g.3.6.2 (A:) Heteropda  12.0      25  0.0018   15.9   0.2   11   30-40      5-15  (30)
  2 d2pi2a1 b.40.4.3 (A:44-171) Re   8.8      55   0.004   14.3   1.1   13   10-22      1-13  (128)
  3 d1ny8a_ d.52.6.1 (A:) Hypothet   6.8      85  0.0062   13.4   1.3   29   10-38      4-32  (97)
  4 d2d9ia1 d.68.8.1 (A:8-90) Nedd   5.4   1E+02  0.0075   13.0   1.1   17   27-43     36-52  (83)
  5 d1ofda3 d.153.1.1 (A:1-430) Al   3.1 1.8E+02   0.013   11.8   0.8   11   33-43     34-44  (430)
  6 d1ea0a3 d.153.1.1 (A:1-422) Al   2.1 2.6E+02   0.019   11.1   0.9   10   34-43     35-44  (422)
  7 d1t64a_ c.42.1.2 (A:) Histone    1.7   3E+02   0.022   10.7   1.0   11   31-41    249-259 (364)
  8 d1c3pa_ c.42.1.2 (A:) HDAC hom   1.6 3.2E+02   0.023   10.6   1.0   11   31-41    252-262 (372)
  9 d1b43a1 a.60.7.1 (A:220-339) F   1.5 2.8E+02    0.02   10.9  -0.2   11   30-40     10-21  (120)
 10 d2gz1a2 d.81.1.1 (A:128-329) A   1.5 3.3E+02   0.024   10.5   0.2    5    2-6      27-31  (202)

No 1  
>d1emxa_ g.3.6.2 (A:) Heteropdatoxin 2, hptx2 {Giant crab spider (Heteropoda venatoria) [TaxId: 152925]}
Probab=12.00  E-value=25  Score=15.91  Aligned_cols=11  Identities=36%  Similarity=0.978  Sum_probs=8.1

Q ss_pred             CEEECCCCCCC
Q ss_conf             00103334678
Q 537021.9.peg.6   30 AIISGCDSHSG   40 (44)
Q Consensus        30 aiisgcdshsg   40 (44)
                      ...||||+|..
T Consensus         5 ~lfsgc~t~ad   15 (30)
T d1emxa_           5 KLFSGCDTNAD   15 (30)
T ss_dssp             CTTCTTCSTTC
T ss_pred             CCCCCCCCCCC
T ss_conf             50236778710


No 2  
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.82  E-value=55  Score=14.27  Aligned_cols=13  Identities=38%  Similarity=0.751  Sum_probs=9.9

Q ss_pred             CCEEECCHHHHHH
Q ss_conf             1110002567787
Q 537021.9.peg.6   10 ERIIPVNIKKLLI   22 (44)
Q Consensus        10 eriipvnikklli   22 (44)
                      +.|+||.||.++-
T Consensus         1 q~i~PvtI~ql~~   13 (128)
T d2pi2a1           1 QHIVPCTISQLLS   13 (128)
T ss_dssp             CCCEECCHHHHHH
T ss_pred             CCEEEEEHHHHHC
T ss_conf             9464189999860


No 3  
>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}
Probab=6.83  E-value=85  Score=13.36  Aligned_cols=29  Identities=24%  Similarity=0.312  Sum_probs=19.3

Q ss_pred             CCEEECCHHHHHHHHHHHCCCEEECCCCC
Q ss_conf             11100025677877664011001033346
Q 537021.9.peg.6   10 ERIIPVNIKKLLIVSLLSSTAIISGCDSH   38 (44)
Q Consensus        10 eriipvnikkllivsllsstaiisgcdsh   38 (44)
                      +...+-.|+.+|.-.+-.+..-+.||++|
T Consensus         4 ~~M~~~eI~~~L~~~l~~~~v~V~g~g~h   32 (97)
T d1ny8a_           4 DPMENNEIQSVLMNALSLQEVHVSGDGSH   32 (97)
T ss_dssp             CCCCCHHHHHHHHHHHCCSEEEEEESSSE
T ss_pred             CCCCHHHHHHHHHHHCCCCEEEEECCCCE
T ss_conf             76889999999995399748999579857


No 4  
>d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.38  E-value=1e+02  Score=12.97  Aligned_cols=17  Identities=35%  Similarity=0.581  Sum_probs=13.0

Q ss_pred             HCCCEEECCCCCCCCCC
Q ss_conf             01100103334678877
Q 537021.9.peg.6   27 SSTAIISGCDSHSGDGV   43 (44)
Q Consensus        27 sstaiisgcdshsgdgv   43 (44)
                      ..--||.|.-.||.+|.
T Consensus        36 ~~l~IItG~G~hS~~g~   52 (83)
T d2d9ia1          36 PYLSVITGRGNHSQGGV   52 (83)
T ss_dssp             SEEEEECCCSGGGTTCT
T ss_pred             EEEEEEECCCCCCCCCC
T ss_conf             07999979877789996


No 5  
>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]}
Probab=3.14  E-value=1.8e+02  Score=11.84  Aligned_cols=11  Identities=45%  Similarity=0.824  Sum_probs=6.6

Q ss_pred             ECCCCCCCCCC
Q ss_conf             03334678877
Q 537021.9.peg.6   33 SGCDSHSGDGV   43 (44)
Q Consensus        33 sgcdshsgdgv   43 (44)
                      .|||..+|||.
T Consensus        34 ~gaD~~tGDGA   44 (430)
T d1ofda3          34 CSADNDSGDGA   44 (430)
T ss_dssp             BCTTSSSBSCE
T ss_pred             CCCCCCCCCCE
T ss_conf             57889985601


No 6  
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]}
Probab=2.11  E-value=2.6e+02  Score=11.09  Aligned_cols=10  Identities=40%  Similarity=0.860  Sum_probs=5.3

Q ss_pred             CCCCCCCCCC
Q ss_conf             3334678877
Q 537021.9.peg.6   34 GCDSHSGDGV   43 (44)
Q Consensus        34 gcdshsgdgv   43 (44)
                      |||..+|||.
T Consensus        35 gaD~~tGDGA   44 (422)
T d1ea0a3          35 DADGKTGDGA   44 (422)
T ss_dssp             CTTSSCCSCB
T ss_pred             CCCCCCCCCC
T ss_conf             7889987701


No 7  
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.71  E-value=3e+02  Score=10.74  Aligned_cols=11  Identities=36%  Similarity=0.676  Sum_probs=0.0

Q ss_pred             EEECCCCCCCC
Q ss_conf             01033346788
Q 537021.9.peg.6   31 IISGCDSHSGD   41 (44)
Q Consensus        31 iisgcdshsgd   41 (44)
                      +-.|+|+|.+|
T Consensus       249 vsaG~D~~~~D  259 (364)
T d1t64a_         249 LQLGADTIAGD  259 (364)
T ss_dssp             EECCSTTBTTC
T ss_pred             EECCCCCCCCC
T ss_conf             98971477899


No 8  
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]}
Probab=1.62  E-value=3.2e+02  Score=10.64  Aligned_cols=11  Identities=27%  Similarity=0.302  Sum_probs=0.0

Q ss_pred             EEECCCCCCCC
Q ss_conf             01033346788
Q 537021.9.peg.6   31 IISGCDSHSGD   41 (44)
Q Consensus        31 iisgcdshsgd   41 (44)
                      +-.|+|+|.+|
T Consensus       252 vsaG~D~~~~D  262 (372)
T d1c3pa_         252 LQLGTDPLLED  262 (372)
T ss_dssp             EECCSTTBTTC
T ss_pred             EECCCCCCCCC
T ss_conf             97881667768


No 9  
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=1.50  E-value=2.8e+02  Score=10.92  Aligned_cols=11  Identities=45%  Similarity=0.767  Sum_probs=0.0

Q ss_pred             CEEECCCCC-CC
Q ss_conf             001033346-78
Q 537021.9.peg.6   30 AIISGCDSH-SG   40 (44)
Q Consensus        30 aiisgcdsh-sg   40 (44)
                      +|..|||-. .|
T Consensus        10 ~iL~G~DY~~~g   21 (120)
T d1b43a1          10 AILVGTDYNPGG   21 (120)
T ss_dssp             HHHHCCTTSTTC
T ss_pred             HHHHCCCCCCCC
T ss_conf             999577788656


No 10 
>d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=1.49  E-value=3.3e+02  Score=10.53  Aligned_cols=5  Identities=100%  Similarity=1.232  Sum_probs=0.0

Q ss_pred             CHHHH
Q ss_conf             30122
Q 537021.9.peg.6    2 YQAVS    6 (44)
Q Consensus         2 yqavs    6 (44)
                      |||+|
T Consensus        27 yQAvS   31 (202)
T d2gz1a2          27 YQAVS   31 (202)
T ss_dssp             EBCGG
T ss_pred             HHHHH
T ss_conf             47577


Done!