RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.60_1
         (44 letters)



>gnl|CDD|182941 PRK11067, PRK11067, outer membrane protein assembly factor YaeT;
          Provisional.
          Length = 803

 Score = 27.7 bits (62), Expect = 0.65
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 17 IKKLLIVSLLSSTAIISGCDSHSGDGVH 44
          +KKLLI SLL S+A + G +      +H
Sbjct: 3  MKKLLIASLLFSSATVYGAEGFVVKDIH 30


>gnl|CDD|184283 PRK13731, PRK13731, conjugal transfer surface exclusion protein
          TraT; Provisional.
          Length = 243

 Score = 27.7 bits (61), Expect = 0.67
 Identities = 12/25 (48%), Positives = 19/25 (76%)

Query: 15 VNIKKLLIVSLLSSTAIISGCDSHS 39
          +  KKL++V+L+SST  +SGC + S
Sbjct: 1  MKTKKLMMVALVSSTLALSGCGAMS 25


>gnl|CDD|182518 PRK10525, PRK10525, cytochrome o ubiquinol oxidase subunit II;
          Provisional.
          Length = 315

 Score = 27.1 bits (60), Expect = 1.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 17 IKKLLIVSLLSSTAIISGCDS 37
           K L  +SL + T ++SGC+S
Sbjct: 7  NKSLGWLSLFAGTVLLSGCNS 27


>gnl|CDD|182939 PRK11063, metQ, DL-methionine transporter substrate-binding
          subunit; Provisional.
          Length = 271

 Score = 25.5 bits (56), Expect = 2.9
 Identities = 8/30 (26%), Positives = 9/30 (30%)

Query: 15 VNIKKLLIVSLLSSTAIISGCDSHSGDGVH 44
             K    V  L  T  + GC     D  H
Sbjct: 3  FKFKTFAAVGALIGTLALVGCGQDEKDPNH 32


>gnl|CDD|164798 PHA00407, PHA00407, phage lambda Rz1-like protein.
          Length = 84

 Score = 24.9 bits (54), Expect = 4.5
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 7/33 (21%)

Query: 14 PVNIKK-------LLIVSLLSSTAIISGCDSHS 39
           ++ KK        LI  LL   A ISGC S S
Sbjct: 21 RLSTKKTLRRWKAALIGLLLICVATISGCASES 53


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.137    0.378 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 655,805
Number of extensions: 22927
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 10
Length of query: 44
Length of database: 5,994,473
Length adjustment: 17
Effective length of query: 27
Effective length of database: 5,627,137
Effective search space: 151932699
Effective search space used: 151932699
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.0 bits)