Query 537021.9.peg.603_1
Match_columns 37
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 24 23:14:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_603.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ba3_A NIKA; dimer, bacterial 10.0 20 0.00085 18.1 -2.0 13 4-16 21-33 (51)
2 2hd0_A Protease NS2-3 (P23); c 8.1 95 0.004 14.8 0.8 11 4-14 77-87 (128)
3 1hzm_A Dual specificity protei 4.9 1.5E+02 0.0063 13.8 0.4 10 1-10 1-10 (154)
4 2k2o_A Myoferlin; muscular dys 4.0 1.6E+02 0.0068 13.6 0.0 10 16-25 74-83 (123)
5 2w56_A VC0508; unknown functio 3.5 2.9E+02 0.012 12.4 1.0 16 5-20 57-74 (147)
6 2pn0_A Prokaryotic transcripti 3.4 2.2E+02 0.0093 12.9 0.3 28 2-32 91-118 (141)
7 2ox7_A Hypothetical protein; s 3.4 2.5E+02 0.011 12.6 0.6 16 11-26 3-18 (155)
8 1oo0_A MAGO nashi protein; RNA 3.3 3.1E+02 0.013 12.2 1.0 11 22-32 4-14 (147)
9 1wib_A 60S ribosomal protein L 3.1 3.4E+02 0.014 12.0 1.5 16 3-18 9-24 (92)
10 2p84_A ORF041; structural geno 2.9 3E+02 0.013 12.3 0.6 8 1-18 3-10 (145)
No 1
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=10.03 E-value=20 Score=18.09 Aligned_cols=13 Identities=46% Similarity=0.713 Sum_probs=9.6
Q ss_pred CCCCCCEEEEEEE
Q ss_conf 1053203455541
Q 537021.9.peg.6 4 IFSPVEAAIIKLR 16 (37)
Q Consensus 4 ifspveaaiiklr 16 (37)
-|||+|+.||+-.
T Consensus 21 RFsp~E~E~v~~k 33 (51)
T 2ba3_A 21 RFSPVEDETIRKK 33 (51)
T ss_dssp EECHHHHHHHHHH
T ss_pred ECCCHHHHHHHHH
T ss_conf 4180168999986
No 2
>2hd0_A Protease NS2-3 (P23); cysteine protease, dimer, composite active site, hydrolase; HET: DMU BOG; 2.28A {Hepatitis c virus}
Probab=8.13 E-value=95 Score=14.77 Aligned_cols=11 Identities=36% Similarity=0.718 Sum_probs=9.5
Q ss_pred CCCCCCEEEEE
Q ss_conf 10532034555
Q 537021.9.peg.6 4 IFSPVEAAIIK 14 (37)
Q Consensus 4 ifspveaaiik 14 (37)
+|||.|..||.
T Consensus 77 vfspme~kvIt 87 (128)
T 2hd0_A 77 VFSRMETKLIT 87 (128)
T ss_dssp ESSCCCCEEEC
T ss_pred ECCCHHEEEEE
T ss_conf 40500046666
No 3
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1
Probab=4.86 E-value=1.5e+02 Score=13.78 Aligned_cols=10 Identities=40% Similarity=0.567 Sum_probs=6.6
Q ss_pred CCCCCCCCCE
Q ss_conf 9641053203
Q 537021.9.peg.6 1 MIPIFSPVEA 10 (37)
Q Consensus 1 mipifspvea 10 (37)
||++|.||..
T Consensus 1 ~~~~~~p~~~ 10 (154)
T 1hzm_A 1 MIDTLRPVPF 10 (154)
T ss_dssp CCTTSCSSSS
T ss_pred CCCCCCCCCC
T ss_conf 9663668986
No 4
>2k2o_A Myoferlin; muscular dystrophy, DYSF, dysferlin, LIMB-girdle, alternative splicing, membrane, nucleus, phosphoprotein, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=4.02 E-value=1.6e+02 Score=13.61 Aligned_cols=10 Identities=40% Similarity=1.179 Sum_probs=7.2
Q ss_pred ECCCCCCEEE
Q ss_conf 1332132566
Q 537021.9.peg.6 16 RGWQYGEEFM 25 (37)
Q Consensus 16 rgwqygeefm 25 (37)
-||+|+..|-
T Consensus 74 ~GW~Y~~~f~ 83 (123)
T 2k2o_A 74 KGWEYGITIP 83 (123)
T ss_dssp TSCEEECCCS
T ss_pred CCCEEEEECC
T ss_conf 8853320215
No 5
>2w56_A VC0508; unknown function; 1.90A {Vibrio cholerae} PDB: 2w56_B
Probab=3.53 E-value=2.9e+02 Score=12.35 Aligned_cols=16 Identities=44% Similarity=0.804 Sum_probs=11.1
Q ss_pred CCCCCEEEEEEEC--CCC
Q ss_conf 0532034555413--321
Q 537021.9.peg.6 5 FSPVEAAIIKLRG--WQY 20 (37)
Q Consensus 5 fspveaaiiklrg--wqy 20 (37)
|.|||-.+.+... ||.
T Consensus 57 fHPVEIrl~r~~~~~W~i 74 (147)
T 2w56_A 57 FHPVEMAICQTSTGEWSI 74 (147)
T ss_dssp SCCEEEEEEECTTSCEEE
T ss_pred CCCEEEEEEECCCCCEEE
T ss_conf 277899999847996999
No 6
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=3.40 E-value=2.2e+02 Score=12.95 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=18.6
Q ss_pred CCCCCCCCEEEEEEECCCCCCEEEEEEECCC
Q ss_conf 6410532034555413321325666642276
Q 537021.9.peg.6 2 IPIFSPVEAAIIKLRGWQYGEEFMLRTYSGE 32 (37)
Q Consensus 2 ipifspveaaiiklrgwqygeefmlrtysge 32 (37)
|.+.||+-+|++ |-+-|+++-+.+-+|.
T Consensus 91 IS~~SPlG~ALl---G~~~Gd~v~v~~P~G~ 118 (141)
T 2pn0_A 91 ISILAPVGSALL---GLAQGDEIEWPKPGGG 118 (141)
T ss_dssp EETTSTTHHHHT---TCBTTCEEEEECTTSS
T ss_pred EECCCHHHHHHH---CCCCCCEEEEECCCCC
T ss_conf 632799999972---8999999999879998
No 7
>2ox7_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK structural genomics research consortium; 1.78A {Enterococcus faecalis V583} SCOP: b.172.1.1
Probab=3.37 E-value=2.5e+02 Score=12.64 Aligned_cols=16 Identities=44% Similarity=0.605 Sum_probs=9.8
Q ss_pred EEEEEECCCCCCEEEE
Q ss_conf 4555413321325666
Q 537021.9.peg.6 11 AIIKLRGWQYGEEFML 26 (37)
Q Consensus 11 aiiklrgwqygeefml 26 (37)
-|.|.|.|--...-|+
T Consensus 3 MipKFRaWdk~~k~m~ 18 (155)
T 2ox7_A 3 LIPKFRAWDTYEKEML 18 (155)
T ss_dssp CCCCEEEEETTTTEEE
T ss_pred CCCEEEEEECCCCEEE
T ss_conf 6647999987999998
No 8
>1oo0_A MAGO nashi protein; RNA recognition motif, splicing, protein complex, EXON junction complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.232.1.1 PDB: 1rk8_B 2x1g_B 1hl6_B 2j0s_C* 2j0q_C* 2hyi_A* 2xb2_C* 3ex7_A* 1p27_A
Probab=3.33 E-value=3.1e+02 Score=12.19 Aligned_cols=11 Identities=55% Similarity=1.020 Sum_probs=6.0
Q ss_pred CEEEEEEECCC
Q ss_conf 25666642276
Q 537021.9.peg.6 22 EEFMLRTYSGE 32 (37)
Q Consensus 22 eefmlrtysge 32 (37)
++|-||-|+|.
T Consensus 4 ~~FYlRYYvGH 14 (147)
T 1oo0_A 4 EDFYLRYYVGH 14 (147)
T ss_dssp CCEEEEEEEEE
T ss_pred CCEEEEEEECC
T ss_conf 63799998146
No 9
>1wib_A 60S ribosomal protein L12; N-terminal domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Mus musculus} SCOP: d.47.1.1
Probab=3.13 E-value=3.4e+02 Score=12.02 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=11.6
Q ss_pred CCCCCCCEEEEEEECC
Q ss_conf 4105320345554133
Q 537021.9.peg.6 3 PIFSPVEAAIIKLRGW 18 (37)
Q Consensus 3 pifspveaaiiklrgw 18 (37)
|-|.|-|..+||||-+
T Consensus 9 pK~dpn~v~~Ikl~v~ 24 (92)
T 1wib_A 9 PKFDPNEVKVVYLRCT 24 (92)
T ss_dssp CCCCSSSCEEEEEEEE
T ss_pred CCCCCCCEEEEEEEEE
T ss_conf 9889780799999984
No 10
>2p84_A ORF041; structural genomics, hypothetical protein, PSI, protein structure initiative, NEW YORK structural genomics research consortium; 1.80A {Staphylococcus phage 37} SCOP: b.172.1.1
Probab=2.90 E-value=3e+02 Score=12.26 Aligned_cols=8 Identities=50% Similarity=1.128 Sum_probs=0.0
Q ss_pred CCCCCCCCCEEEEEEECC
Q ss_conf 964105320345554133
Q 537021.9.peg.6 1 MIPIFSPVEAAIIKLRGW 18 (37)
Q Consensus 1 mipifspveaaiiklrgw 18 (37)
||| |.|.|
T Consensus 3 MiP----------KFRaW 10 (145)
T 2p84_A 3 LIP----------KFREF 10 (145)
T ss_dssp CCC----------CEEEE
T ss_pred CCC----------EEEEE
T ss_conf 677----------78979
Done!