Query 537021.9.peg.612_1 Match_columns 53 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 39220 Date Wed May 25 05:20:34 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_612.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK07209 ribonucleotide-diphos 94.7 0.0065 1.7E-07 35.0 -0.2 19 35-53 364-382 (391) 2 PRK12759 bifunctional gluaredo 81.5 0.34 8.7E-06 26.8 -0.3 17 37-53 379-395 (410) 3 PTZ00211 ribonucleotide reduct 55.5 2.7 7E-05 22.5 -0.4 25 29-53 286-310 (330) 4 PRK13966 nrdF2 ribonucleotide- 53.9 4.4 0.00011 21.5 0.4 22 32-53 288-309 (324) 5 PRK13965 ribonucleotide-diphos 37.3 10 0.00026 19.8 0.1 16 38-53 307-322 (337) 6 PRK09614 nrdF ribonucleotide-d 22.2 27 0.00068 17.8 0.1 13 41-53 298-310 (325) 7 pfam05867 DUF851 Caenorhabditi 20.0 30 0.00077 17.5 0.0 11 24-34 14-24 (32) 8 PRK13967 nrdF1 ribonucleotide- 18.7 38 0.00096 17.0 0.3 18 36-53 288-307 (322) 9 KOG2814 consensus 17.0 45 0.0011 16.7 0.3 45 2-50 259-305 (345) 10 pfam09351 DUF1993 Domain of un 14.3 34 0.00088 17.2 -0.8 37 3-42 122-158 (162) No 1 >PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated Probab=94.74 E-value=0.0065 Score=34.98 Aligned_cols=19 Identities=68% Similarity=1.055 Sum_probs=17.3 Q ss_pred HHCCHHHHCCCEECCCCCC Q ss_conf 0023021024000001369 Q 537021.9.peg.6 35 SKMDLKKENNFFETRTTEY 53 (53) Q Consensus 35 skmdlkkennffetrttey 53 (53) .-+|++++.||||+|.||| T Consensus 364 e~idl~~~tNFFE~RVteY 382 (391) T PRK07209 364 EMIDLKKEKNFFETRVIEY 382 (391) T ss_pred HHHCCCCCCCCCCCCHHHH T ss_conf 8627332135133208776 No 2 >PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional Probab=81.48 E-value=0.34 Score=26.78 Aligned_cols=17 Identities=47% Similarity=0.825 Sum_probs=14.8 Q ss_pred CCHHHHCCCEECCCCCC Q ss_conf 23021024000001369 Q 537021.9.peg.6 37 MDLKKENNFFETRTTEY 53 (53) Q Consensus 37 mdlkkennffetrttey 53 (53) ++..+..||||+|.+|| T Consensus 379 l~~~~ktNFFE~RVtEY 395 (410) T PRK12759 379 LNGADHTNFFENRVTEY 395 (410) T ss_pred HCCCCCCCCCCCCHHHH T ss_conf 76755577567768877 No 3 >PTZ00211 ribonucleotide reductase small subunit; Provisional Probab=55.55 E-value=2.7 Score=22.47 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=16.9 Q ss_pred CHHHHHHHCCHHHHCCCEECCCCCC Q ss_conf 0021110023021024000001369 Q 537021.9.peg.6 29 NSIFHKSKMDLKKENNFFETRTTEY 53 (53) Q Consensus 29 nsifhkskmdlkkennffetrttey 53 (53) |.+-.-..+++.+..||||+|.|+| T Consensus 286 nP~~w~~~~~~~~ktnFFE~r~t~Y 310 (330) T PTZ00211 286 NPFDWMEMISLQGKTNFFEKKVGEY 310 (330) T ss_pred CCCHHHHHHCCCCCCCCCCCCHHHH T ss_conf 9845899854688888766778888 No 4 >PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional Probab=53.91 E-value=4.4 Score=21.49 Aligned_cols=22 Identities=14% Similarity=0.385 Sum_probs=15.6 Q ss_pred HHHHHCCHHHHCCCEECCCCCC Q ss_conf 1110023021024000001369 Q 537021.9.peg.6 32 FHKSKMDLKKENNFFETRTTEY 53 (53) Q Consensus 32 fhkskmdlkkennffetrttey 53 (53) +-....+..+..||||+|.|+| T Consensus 288 ~~~~~~~~~~~~nFFE~r~t~Y 309 (324) T PRK13966 288 LSALSPNADENHDFFSGSGSSY 309 (324) T ss_pred HHHHHHCCCCCCCCCCCCHHHH T ss_conf 9986225675378678870021 No 5 >PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional Probab=37.30 E-value=10 Score=19.78 Aligned_cols=16 Identities=19% Similarity=0.549 Sum_probs=11.6 Q ss_pred CHHHHCCCEECCCCCC Q ss_conf 3021024000001369 Q 537021.9.peg.6 38 DLKKENNFFETRTTEY 53 (53) Q Consensus 38 dlkkennffetrttey 53 (53) +.++..||||+|.|+| T Consensus 307 ~~~~~~dFFE~r~t~Y 322 (337) T PRK13965 307 RADENHDFFSGNGSSY 322 (337) T ss_pred CCCCCCCCCCCCCCHH T ss_conf 7886778547772100 No 6 >PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed Probab=22.16 E-value=27 Score=17.77 Aligned_cols=13 Identities=38% Similarity=0.874 Sum_probs=10.9 Q ss_pred HHCCCEECCCCCC Q ss_conf 1024000001369 Q 537021.9.peg.6 41 KENNFFETRTTEY 53 (53) Q Consensus 41 kennffetrttey 53 (53) +..||||+|.++| T Consensus 298 ~~tnFFE~r~t~Y 310 (325) T PRK09614 298 ENHDFFEGKGTSY 310 (325) T ss_pred CCCCCCCCCHHHH T ss_conf 0458987871132 No 7 >pfam05867 DUF851 Caenorhabditis elegans repeat of unknown function (DUF851). This family consists of several repeated 32 residue sequences which seem only to be found in the Caenorhabditis elegans. Probab=19.98 E-value=30 Score=17.49 Aligned_cols=11 Identities=55% Similarity=0.458 Sum_probs=6.6 Q ss_pred EEHHCCHHHHH Q ss_conf 10010002111 Q 537021.9.peg.6 24 KTIMSNSIFHK 34 (53) Q Consensus 24 ktimsnsifhk 34 (53) ---||||||.- T Consensus 14 flkmsnsifdl 24 (32) T pfam05867 14 FLKMSNSIFDL 24 (32) T ss_pred EEECCCCCCCC T ss_conf 40106751167 No 8 >PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional Probab=18.70 E-value=38 Score=17.05 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=12.4 Q ss_pred HCCHHH--HCCCEECCCCCC Q ss_conf 023021--024000001369 Q 537021.9.peg.6 36 KMDLKK--ENNFFETRTTEY 53 (53) Q Consensus 36 kmdlkk--ennffetrttey 53 (53) -+++.+ ..||||.|.|+| T Consensus 288 ~~~~~~~~~~dFFe~r~t~Y 307 (322) T PRK13967 288 ALDPGAGENHDFFSGSGSSY 307 (322) T ss_pred HHCCCCCCCCCCCCCCCCCC T ss_conf 75768763268557886400 No 9 >KOG2814 consensus Probab=16.95 E-value=45 Score=16.69 Aligned_cols=45 Identities=38% Similarity=0.441 Sum_probs=31.9 Q ss_pred CCHHHHHHHHCCCCCCEEEEEEEEHHCCHHHHHHH--CCHHHHCCCEECCC Q ss_conf 63015565411379845777411001000211100--23021024000001 Q 537021.9.peg.6 2 DDFHLSDLIHEESSPGFYFHYQKTIMSNSIFHKSK--MDLKKENNFFETRT 50 (53) Q Consensus 2 ddfhlsdliheesspgfyfhyqktimsnsifhksk--mdlkkennffetrt 50 (53) +-|-.+++|+.+++++-+ | -|. +|+++.|-. -+++|+-++|..|. T Consensus 259 ~~f~~~~li~k~~~~~kL-H--~Tv-mNsryrk~~~~~g~~K~~~~Fdar~ 305 (345) T KOG2814 259 ERFVASGLIKKESSSLKL-H--CTV-MNSRYRKNGGEPGLVKESESFDARE 305 (345) T ss_pred HHHHHHCCHHCCCCCCEE-E--EEE-EHHHHHHCCCCCCHHHHHHHCCHHH T ss_conf 999871420025655079-9--997-3344542578741356766323799 No 10 >pfam09351 DUF1993 Domain of unknown function (DUF1993). This family of proteins are functionally uncharacterized. Probab=14.32 E-value=34 Score=17.23 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=24.7 Q ss_pred CHHHHHHHHCCCCCCEEEEEEEEHHCCHHHHHHHCCHHHH Q ss_conf 3015565411379845777411001000211100230210 Q 537021.9.peg.6 3 DFHLSDLIHEESSPGFYFHYQKTIMSNSIFHKSKMDLKKE 42 (53) Q Consensus 3 dfhlsdliheesspgfyfhyqktimsnsifhkskmdlkke 42 (53) +|.-.+.+..=+-|.||||.. |.-+|..+..+.|-|- T Consensus 122 ~~tg~~yl~~falPNfyFH~t---taY~ILR~~GV~lGK~ 158 (162) T pfam09351 122 DFTGEAYLLSFALPNFYFHVT---TAYAILRHNGVELGKR 158 (162) T ss_pred EECHHHHHHHHCCCHHHHHHH---HHHHHHHHCCCCCCCC T ss_conf 610999999801534898899---9999999759987766 Done!