Query         537021.9.peg.612_1
Match_columns 53
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Tue May 24 22:03:51 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_612.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2awia1 a.35.1.11 (A:2-66) Prg   6.0      64  0.0047   13.8   0.3   16   24-39     23-38  (65)
  2 d1dwka2 d.72.1.1 (A:87-156) Cy   4.5      65  0.0047   13.7  -0.5   28    5-43     21-48  (70)
  3 d1x4ka2 g.39.1.3 (A:8-34) Four   4.4      62  0.0045   13.8  -0.6   23   20-47      2-24  (27)
  4 d2oqma1 a.213.1.3 (A:1-171) Hy   4.1      23  0.0017   15.8  -3.0   35    5-42    126-160 (171)
  5 d1dfma_ c.52.1.5 (A:) Restrict   3.4 1.4E+02    0.01   12.2   0.4   15   29-43    109-123 (223)
  6 d2ffta1 g.88.1.1 (A:2-84) Thyl   3.2 1.3E+02  0.0095   12.3   0.1   11   39-49     22-32  (83)
  7 d2bbaa1 b.18.1.4 (A:17-196) Ep   2.3 2.3E+02   0.017   11.1   1.0   11   14-24    154-164 (180)
  8 d1tuwa_ d.58.4.8 (A:) Tetracen   1.9 2.7E+02   0.019   10.8   1.3   11   16-26     45-55  (106)
  9 d1kxga_ b.22.1.1 (A:) Soluble    1.8 2.8E+02   0.021   10.7   0.6   14   14-27     47-60  (144)
 10 d1wyha2 g.39.1.3 (A:8-34) Four   1.7 2.7E+02    0.02   10.8   0.0   14   23-40      5-18  (27)

No 1  
>d2awia1 a.35.1.11 (A:2-66) PrgX {Enterococcus faecalis [TaxId: 1351]}
Probab=6.01  E-value=64  Score=13.77  Aligned_cols=16  Identities=38%  Similarity=0.497  Sum_probs=11.9

Q ss_pred             EEHHCCHHHHHHHCCH
Q ss_conf             1001000211100230
Q 537021.9.peg.6   24 KTIMSNSIFHKSKMDL   39 (53)
Q Consensus        24 ktimsnsifhkskmdl   39 (53)
                      ..|||.||+-|-..|-
T Consensus        23 sgimsksiyikveads   38 (65)
T d2awia1          23 SGIMSKSVYIKVEADS   38 (65)
T ss_dssp             TTTSCHHHHHHHHTTC
T ss_pred             HHHCCCCEEEEEECCC
T ss_conf             5122012699984488


No 2  
>d1dwka2 d.72.1.1 (A:87-156) Cyanase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.54  E-value=65  Score=13.74  Aligned_cols=28  Identities=43%  Similarity=0.624  Sum_probs=18.0

Q ss_pred             HHHHHHHCCCCCCEEEEEEEEHHCCHHHHHHHCCHHHHC
Q ss_conf             155654113798457774110010002111002302102
Q 537021.9.peg.6    5 HLSDLIHEESSPGFYFHYQKTIMSNSIFHKSKMDLKKEN   43 (53)
Q Consensus         5 hlsdliheesspgfyfhyqktimsnsifhkskmdlkken   43 (53)
                      .+.++|||+-.-|        |||.--|   +||+.|+.
T Consensus        21 ~~K~li~E~FGDG--------IMSAIdF---~~~v~k~~   48 (70)
T d1dwka2          21 TLKALVHEKFGDG--------IISAINF---KLDVKKVA   48 (70)
T ss_dssp             HHHHHHHHHTCSE--------EEEEEEE---EEEEEEEE
T ss_pred             HHHHHHHHHCCCC--------EEEEEEE---EEEEEEEC
T ss_conf             8999998870654--------7776760---14678600


No 3  
>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.43  E-value=62  Score=13.84  Aligned_cols=23  Identities=35%  Similarity=0.524  Sum_probs=14.0

Q ss_pred             EEEEEEHHCCHHHHHHHCCHHHHCCCEE
Q ss_conf             7741100100021110023021024000
Q 537021.9.peg.6   20 FHYQKTIMSNSIFHKSKMDLKKENNFFE   47 (53)
Q Consensus        20 fhyqktimsnsifhkskmdlkkennffe   47 (53)
                      ++-+||||..|    .||+.|- |.+-|
T Consensus         2 ~~C~ktiMPGs----rKme~kG-~~WHE   24 (27)
T d1x4ka2           2 QECKKTIMPGT----RKMEYKG-SSWHE   24 (27)
T ss_dssp             SSSCCCCCSSS----CEEEETT-EEEET
T ss_pred             CCCCCCCCCCC----EEECCCC-CCCCC
T ss_conf             55555215785----0200247-72331


No 4  
>d2oqma1 a.213.1.3 (A:1-171) Hypothetical protein Sden0562 {Shewanella denitrificans [TaxId: 192073]}
Probab=4.14  E-value=23  Score=15.85  Aligned_cols=35  Identities=20%  Similarity=0.424  Sum_probs=19.8

Q ss_pred             HHHHHHHCCCCCCEEEEEEEEHHCCHHHHHHHCCHHHH
Q ss_conf             15565411379845777411001000211100230210
Q 537021.9.peg.6    5 HLSDLIHEESSPGFYFHYQKTIMSNSIFHKSKMDLKKE   42 (53)
Q Consensus         5 hlsdliheesspgfyfhyqktimsnsifhkskmdlkke   42 (53)
                      --.|.+..=+-|.||||..   +.-.|..+..+.|-|-
T Consensus       126 t~~~yl~~falPNfyFH~t---taY~ILR~~GV~lGK~  160 (171)
T d2oqma1         126 TGYEFAIEHAIPNLYFHIT---TAYGILRHNGVEVGKK  160 (171)
T ss_dssp             EHHHHHHHTHHHHHHHHHH---HHHHHHHHHTCCCCHH
T ss_pred             CHHHHHHHHCCCHHHHHHH---HHHHHHHHCCCCCCCC
T ss_conf             6999999804742898899---9999999759987632


No 5  
>d1dfma_ c.52.1.5 (A:) Restriction endonuclease BglII {Bacillus subtilis [TaxId: 1423]}
Probab=3.37  E-value=1.4e+02  Score=12.15  Aligned_cols=15  Identities=47%  Similarity=0.902  Sum_probs=9.0

Q ss_pred             CHHHHHHHCCHHHHC
Q ss_conf             002111002302102
Q 537021.9.peg.6   29 NSIFHKSKMDLKKEN   43 (53)
Q Consensus        29 nsifhkskmdlkken   43 (53)
                      -.+||+++|+++.++
T Consensus       109 ~~~~~~~n~~~~~~~  123 (223)
T d1dfma_         109 SELFHKSNMDIDEEG  123 (223)
T ss_dssp             HHHHHHHTCBSSSSB
T ss_pred             HHHHHHHCCCCCCCC
T ss_conf             998887444100246


No 6  
>d2ffta1 g.88.1.1 (A:2-84) Thylakoid soluble phosphoprotein TSP9 {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=3.17  E-value=1.3e+02  Score=12.29  Aligned_cols=11  Identities=45%  Similarity=0.924  Sum_probs=7.2

Q ss_pred             HHHHCCCEECC
Q ss_conf             02102400000
Q 537021.9.peg.6   39 LKKENNFFETR   49 (53)
Q Consensus        39 lkkennffetr   49 (53)
                      +.||..||||.
T Consensus        22 ~~KeDQFyETd   32 (83)
T d2ffta1          22 ITKEDQFYETD   32 (83)
T ss_dssp             HSCCCCSCCSC
T ss_pred             CCCCCCCCCCC
T ss_conf             64543121046


No 7  
>d2bbaa1 b.18.1.4 (A:17-196) Ephrin type-B receptor 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.28  E-value=2.3e+02  Score=11.08  Aligned_cols=11  Identities=45%  Similarity=1.014  Sum_probs=5.5

Q ss_pred             CCCCEEEEEEE
Q ss_conf             79845777411
Q 537021.9.peg.6   14 SSPGFYFHYQK   24 (53)
Q Consensus        14 sspgfyfhyqk   24 (53)
                      |..|||+-.|.
T Consensus       154 sk~GfYLAFqD  164 (180)
T d2bbaa1         154 SKAGFYLAFQD  164 (180)
T ss_dssp             CSSEEEEEEEE
T ss_pred             CCCEEEEEECC
T ss_conf             88769999754


No 8  
>d1tuwa_ d.58.4.8 (A:) Tetracenomycin polyketide synthesis protein TcmI {Streptomyces glaucescens [TaxId: 1907]}
Probab=1.95  E-value=2.7e+02  Score=10.81  Aligned_cols=11  Identities=18%  Similarity=0.380  Sum_probs=8.3

Q ss_pred             CCEEEEEEEEH
Q ss_conf             84577741100
Q 537021.9.peg.6   16 PGFYFHYQKTI   26 (53)
Q Consensus        16 pgfyfhyqkti   26 (53)
                      -|.|||.|..-
T Consensus        45 ~gLY~HL~e~d   55 (106)
T d1tuwa_          45 HDLYMHLIEAD   55 (106)
T ss_dssp             TTEEEEEEEES
T ss_pred             CCEEEEEEECC
T ss_conf             78899988526


No 9  
>d1kxga_ b.22.1.1 (A:) Soluble part of TALL-1, sTALL-1 (BAFF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.78  E-value=2.8e+02  Score=10.67  Aligned_cols=14  Identities=21%  Similarity=0.783  Sum_probs=10.0

Q ss_pred             CCCCEEEEEEEEHH
Q ss_conf             79845777411001
Q 537021.9.peg.6   14 SSPGFYFHYQKTIM   27 (53)
Q Consensus        14 sspgfyfhyqktim   27 (53)
                      -.+|+||-|-....
T Consensus        47 ~~~GlYfVYsQV~F   60 (144)
T d1kxga_          47 KETGYFFIYGQVLY   60 (144)
T ss_dssp             CSCEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEE
T ss_conf             45649999999999


No 10 
>d1wyha2 g.39.1.3 (A:8-34) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.68  E-value=2.7e+02  Score=10.79  Aligned_cols=14  Identities=29%  Similarity=0.489  Sum_probs=8.7

Q ss_pred             EEEHHCCHHHHHHHCCHH
Q ss_conf             110010002111002302
Q 537021.9.peg.6   23 QKTIMSNSIFHKSKMDLK   40 (53)
Q Consensus        23 qktimsnsifhkskmdlk   40 (53)
                      .||||..|    .||+.+
T Consensus         5 ~ktiMPGs----rKmey~   18 (27)
T d1wyha2           5 GETVMPGS----RKLEYG   18 (27)
T ss_dssp             CCBCCSSS----CEECST
T ss_pred             CCEECCCC----CCCCCC
T ss_conf             14155784----011126


Done!