Query 537021.9.peg.612_1 Match_columns 53 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Tue May 24 22:03:51 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_612.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2awia1 a.35.1.11 (A:2-66) Prg 6.0 64 0.0047 13.8 0.3 16 24-39 23-38 (65) 2 d1dwka2 d.72.1.1 (A:87-156) Cy 4.5 65 0.0047 13.7 -0.5 28 5-43 21-48 (70) 3 d1x4ka2 g.39.1.3 (A:8-34) Four 4.4 62 0.0045 13.8 -0.6 23 20-47 2-24 (27) 4 d2oqma1 a.213.1.3 (A:1-171) Hy 4.1 23 0.0017 15.8 -3.0 35 5-42 126-160 (171) 5 d1dfma_ c.52.1.5 (A:) Restrict 3.4 1.4E+02 0.01 12.2 0.4 15 29-43 109-123 (223) 6 d2ffta1 g.88.1.1 (A:2-84) Thyl 3.2 1.3E+02 0.0095 12.3 0.1 11 39-49 22-32 (83) 7 d2bbaa1 b.18.1.4 (A:17-196) Ep 2.3 2.3E+02 0.017 11.1 1.0 11 14-24 154-164 (180) 8 d1tuwa_ d.58.4.8 (A:) Tetracen 1.9 2.7E+02 0.019 10.8 1.3 11 16-26 45-55 (106) 9 d1kxga_ b.22.1.1 (A:) Soluble 1.8 2.8E+02 0.021 10.7 0.6 14 14-27 47-60 (144) 10 d1wyha2 g.39.1.3 (A:8-34) Four 1.7 2.7E+02 0.02 10.8 0.0 14 23-40 5-18 (27) No 1 >d2awia1 a.35.1.11 (A:2-66) PrgX {Enterococcus faecalis [TaxId: 1351]} Probab=6.01 E-value=64 Score=13.77 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=11.9 Q ss_pred EEHHCCHHHHHHHCCH Q ss_conf 1001000211100230 Q 537021.9.peg.6 24 KTIMSNSIFHKSKMDL 39 (53) Q Consensus 24 ktimsnsifhkskmdl 39 (53) ..|||.||+-|-..|- T Consensus 23 sgimsksiyikveads 38 (65) T d2awia1 23 SGIMSKSVYIKVEADS 38 (65) T ss_dssp TTTSCHHHHHHHHTTC T ss_pred HHHCCCCEEEEEECCC T ss_conf 5122012699984488 No 2 >d1dwka2 d.72.1.1 (A:87-156) Cyanase C-terminal domain {Escherichia coli [TaxId: 562]} Probab=4.54 E-value=65 Score=13.74 Aligned_cols=28 Identities=43% Similarity=0.624 Sum_probs=18.0 Q ss_pred HHHHHHHCCCCCCEEEEEEEEHHCCHHHHHHHCCHHHHC Q ss_conf 155654113798457774110010002111002302102 Q 537021.9.peg.6 5 HLSDLIHEESSPGFYFHYQKTIMSNSIFHKSKMDLKKEN 43 (53) Q Consensus 5 hlsdliheesspgfyfhyqktimsnsifhkskmdlkken 43 (53) .+.++|||+-.-| |||.--| +||+.|+. T Consensus 21 ~~K~li~E~FGDG--------IMSAIdF---~~~v~k~~ 48 (70) T d1dwka2 21 TLKALVHEKFGDG--------IISAINF---KLDVKKVA 48 (70) T ss_dssp HHHHHHHHHTCSE--------EEEEEEE---EEEEEEEE T ss_pred HHHHHHHHHCCCC--------EEEEEEE---EEEEEEEC T ss_conf 8999998870654--------7776760---14678600 No 3 >d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]} Probab=4.43 E-value=62 Score=13.84 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=14.0 Q ss_pred EEEEEEHHCCHHHHHHHCCHHHHCCCEE Q ss_conf 7741100100021110023021024000 Q 537021.9.peg.6 20 FHYQKTIMSNSIFHKSKMDLKKENNFFE 47 (53) Q Consensus 20 fhyqktimsnsifhkskmdlkkennffe 47 (53) ++-+||||..| .||+.|- |.+-| T Consensus 2 ~~C~ktiMPGs----rKme~kG-~~WHE 24 (27) T d1x4ka2 2 QECKKTIMPGT----RKMEYKG-SSWHE 24 (27) T ss_dssp SSSCCCCCSSS----CEEEETT-EEEET T ss_pred CCCCCCCCCCC----EEECCCC-CCCCC T ss_conf 55555215785----0200247-72331 No 4 >d2oqma1 a.213.1.3 (A:1-171) Hypothetical protein Sden0562 {Shewanella denitrificans [TaxId: 192073]} Probab=4.14 E-value=23 Score=15.85 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=19.8 Q ss_pred HHHHHHHCCCCCCEEEEEEEEHHCCHHHHHHHCCHHHH Q ss_conf 15565411379845777411001000211100230210 Q 537021.9.peg.6 5 HLSDLIHEESSPGFYFHYQKTIMSNSIFHKSKMDLKKE 42 (53) Q Consensus 5 hlsdliheesspgfyfhyqktimsnsifhkskmdlkke 42 (53) --.|.+..=+-|.||||.. +.-.|..+..+.|-|- T Consensus 126 t~~~yl~~falPNfyFH~t---taY~ILR~~GV~lGK~ 160 (171) T d2oqma1 126 TGYEFAIEHAIPNLYFHIT---TAYGILRHNGVEVGKK 160 (171) T ss_dssp EHHHHHHHTHHHHHHHHHH---HHHHHHHHHTCCCCHH T ss_pred CHHHHHHHHCCCHHHHHHH---HHHHHHHHCCCCCCCC T ss_conf 6999999804742898899---9999999759987632 No 5 >d1dfma_ c.52.1.5 (A:) Restriction endonuclease BglII {Bacillus subtilis [TaxId: 1423]} Probab=3.37 E-value=1.4e+02 Score=12.15 Aligned_cols=15 Identities=47% Similarity=0.902 Sum_probs=9.0 Q ss_pred CHHHHHHHCCHHHHC Q ss_conf 002111002302102 Q 537021.9.peg.6 29 NSIFHKSKMDLKKEN 43 (53) Q Consensus 29 nsifhkskmdlkken 43 (53) -.+||+++|+++.++ T Consensus 109 ~~~~~~~n~~~~~~~ 123 (223) T d1dfma_ 109 SELFHKSNMDIDEEG 123 (223) T ss_dssp HHHHHHHTCBSSSSB T ss_pred HHHHHHHCCCCCCCC T ss_conf 998887444100246 No 6 >d2ffta1 g.88.1.1 (A:2-84) Thylakoid soluble phosphoprotein TSP9 {Spinach (Spinacia oleracea) [TaxId: 3562]} Probab=3.17 E-value=1.3e+02 Score=12.29 Aligned_cols=11 Identities=45% Similarity=0.924 Sum_probs=7.2 Q ss_pred HHHHCCCEECC Q ss_conf 02102400000 Q 537021.9.peg.6 39 LKKENNFFETR 49 (53) Q Consensus 39 lkkennffetr 49 (53) +.||..||||. T Consensus 22 ~~KeDQFyETd 32 (83) T d2ffta1 22 ITKEDQFYETD 32 (83) T ss_dssp HSCCCCSCCSC T ss_pred CCCCCCCCCCC T ss_conf 64543121046 No 7 >d2bbaa1 b.18.1.4 (A:17-196) Ephrin type-B receptor 4 {Human (Homo sapiens) [TaxId: 9606]} Probab=2.28 E-value=2.3e+02 Score=11.08 Aligned_cols=11 Identities=45% Similarity=1.014 Sum_probs=5.5 Q ss_pred CCCCEEEEEEE Q ss_conf 79845777411 Q 537021.9.peg.6 14 SSPGFYFHYQK 24 (53) Q Consensus 14 sspgfyfhyqk 24 (53) |..|||+-.|. T Consensus 154 sk~GfYLAFqD 164 (180) T d2bbaa1 154 SKAGFYLAFQD 164 (180) T ss_dssp CSSEEEEEEEE T ss_pred CCCEEEEEECC T ss_conf 88769999754 No 8 >d1tuwa_ d.58.4.8 (A:) Tetracenomycin polyketide synthesis protein TcmI {Streptomyces glaucescens [TaxId: 1907]} Probab=1.95 E-value=2.7e+02 Score=10.81 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=8.3 Q ss_pred CCEEEEEEEEH Q ss_conf 84577741100 Q 537021.9.peg.6 16 PGFYFHYQKTI 26 (53) Q Consensus 16 pgfyfhyqkti 26 (53) -|.|||.|..- T Consensus 45 ~gLY~HL~e~d 55 (106) T d1tuwa_ 45 HDLYMHLIEAD 55 (106) T ss_dssp TTEEEEEEEES T ss_pred CCEEEEEEECC T ss_conf 78899988526 No 9 >d1kxga_ b.22.1.1 (A:) Soluble part of TALL-1, sTALL-1 (BAFF) {Human (Homo sapiens) [TaxId: 9606]} Probab=1.78 E-value=2.8e+02 Score=10.67 Aligned_cols=14 Identities=21% Similarity=0.783 Sum_probs=10.0 Q ss_pred CCCCEEEEEEEEHH Q ss_conf 79845777411001 Q 537021.9.peg.6 14 SSPGFYFHYQKTIM 27 (53) Q Consensus 14 sspgfyfhyqktim 27 (53) -.+|+||-|-.... T Consensus 47 ~~~GlYfVYsQV~F 60 (144) T d1kxga_ 47 KETGYFFIYGQVLY 60 (144) T ss_dssp CSCEEEEEEEEEEE T ss_pred CCCEEEEEEEEEEE T ss_conf 45649999999999 No 10 >d1wyha2 g.39.1.3 (A:8-34) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]} Probab=1.68 E-value=2.7e+02 Score=10.79 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=8.7 Q ss_pred EEEHHCCHHHHHHHCCHH Q ss_conf 110010002111002302 Q 537021.9.peg.6 23 QKTIMSNSIFHKSKMDLK 40 (53) Q Consensus 23 qktimsnsifhkskmdlk 40 (53) .||||..| .||+.+ T Consensus 5 ~ktiMPGs----rKmey~ 18 (27) T d1wyha2 5 GETVMPGS----RKLEYG 18 (27) T ss_dssp CCBCCSSS----CEECST T ss_pred CCEECCCC----CCCCCC T ss_conf 14155784----011126 Done!