RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.612_1
         (53 letters)



>1r2f_A Protein (ribonucleotide reductase R2); nucleotide
           metabolism, oxidoreductase; 2.10A {Salmonella
           typhimurium} (A:129-319)
          Length = 191

 Score = 25.3 bits (55), Expect = 3.2
 Identities = 4/23 (17%), Positives = 9/23 (39%)

Query: 31  IFHKSKMDLKKENNFFETRTTEY 53
           I      +  + ++FF    + Y
Sbjct: 154 ILAALSPNADENHDFFSGSGSSY 176


>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen
           bond, metal binding protein; 1.63A {Corynebacterium
           ammoniagenes} (A:139-329)
          Length = 191

 Score = 24.9 bits (54), Expect = 4.3
 Identities = 4/23 (17%), Positives = 9/23 (39%)

Query: 31  IFHKSKMDLKKENNFFETRTTEY 53
           I      +  + ++FF    + Y
Sbjct: 154 ILSSLSPNADENHDFFSGSGSSY 176


>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese,
           iron, DIIRON, carboxylate, oxidase, ligand, cavity,
           monooxygenase; HET: MYR; 1.90A {Mycobacterium
           tuberculosis} (A:)
          Length = 323

 Score = 24.4 bits (52), Expect = 5.6
 Identities = 2/17 (11%), Positives = 5/17 (29%)

Query: 37  MDLKKENNFFETRTTEY 53
              + E+ F +      
Sbjct: 302 SPAQLEDTFADEDRRTL 318


>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON,
           oxygen activation, iron coupled radical, immune evasion,
           replication; 1.70A {Chlamydia trachomatis} (A:)
          Length = 346

 Score = 24.0 bits (51), Expect = 8.3
 Identities = 12/17 (70%), Positives = 13/17 (76%)

Query: 37  MDLKKENNFFETRTTEY 53
           +DL KE NFFETR  EY
Sbjct: 322 IDLNKEKNFFETRVIEY 338


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.319    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0496    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 378,644
Number of extensions: 10663
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 10
Length of query: 53
Length of database: 4,956,049
Length adjustment: 23
Effective length of query: 30
Effective length of database: 4,178,534
Effective search space: 125356020
Effective search space used: 125356020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.6 bits)