RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= 537021.9.peg.612_1 (53 letters) >1r2f_A Protein (ribonucleotide reductase R2); nucleotide metabolism, oxidoreductase; 2.10A {Salmonella typhimurium} (A:129-319) Length = 191 Score = 25.3 bits (55), Expect = 3.2 Identities = 4/23 (17%), Positives = 9/23 (39%) Query: 31 IFHKSKMDLKKENNFFETRTTEY 53 I + + ++FF + Y Sbjct: 154 ILAALSPNADENHDFFSGSGSSY 176 >3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} (A:139-329) Length = 191 Score = 24.9 bits (54), Expect = 4.3 Identities = 4/23 (17%), Positives = 9/23 (39%) Query: 31 IFHKSKMDLKKENNFFETRTTEY 53 I + + ++FF + Y Sbjct: 154 ILSSLSPNADENHDFFSGSGSSY 176 >3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, cavity, monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} (A:) Length = 323 Score = 24.4 bits (52), Expect = 5.6 Identities = 2/17 (11%), Positives = 5/17 (29%) Query: 37 MDLKKENNFFETRTTEY 53 + E+ F + Sbjct: 302 SPAQLEDTFADEDRRTL 318 >1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune evasion, replication; 1.70A {Chlamydia trachomatis} (A:) Length = 346 Score = 24.0 bits (51), Expect = 8.3 Identities = 12/17 (70%), Positives = 13/17 (76%) Query: 37 MDLKKENNFFETRTTEY 53 +DL KE NFFETR EY Sbjct: 322 IDLNKEKNFFETRVIEY 338 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.319 0.134 0.391 Gapped Lambda K H 0.267 0.0496 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 378,644 Number of extensions: 10663 Number of successful extensions: 21 Number of sequences better than 10.0: 1 Number of HSP's gapped: 21 Number of HSP's successfully gapped: 10 Length of query: 53 Length of database: 4,956,049 Length adjustment: 23 Effective length of query: 30 Effective length of database: 4,178,534 Effective search space: 125356020 Effective search space used: 125356020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.6 bits)