Query 537021.9.peg.634_1 Match_columns 45 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 39220 Date Wed May 25 00:44:55 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_634.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 KOG2313 consensus 42.4 6.7 0.00017 21.1 -0.1 14 4-17 56-69 (100) 2 COG0271 BolA Stress-induced mo 33.0 11 0.00029 20.0 -0.2 35 4-38 44-82 (90) 3 PHA02099 hypothetical protein 28.5 9.6 0.00025 20.3 -1.2 36 9-44 40-75 (84) 4 KOG1172 consensus 20.6 44 0.0011 17.0 1.0 22 4-25 405-436 (876) 5 pfam05613 Herpes_U15 Human her 19.0 44 0.0011 17.0 0.7 23 5-27 23-45 (110) 6 pfam00955 HCO3_cotransp HCO3- 17.2 57 0.0015 16.4 1.0 21 4-24 78-108 (501) 7 COG5663 Uncharacterized conser 11.4 89 0.0023 15.5 0.6 39 2-44 100-144 (194) 8 KOG0729 consensus 11.2 1.3E+02 0.0032 14.7 1.3 19 20-42 261-279 (435) 9 TIGR00073 hypB hydrogenase acc 10.0 99 0.0025 15.2 0.4 32 2-36 36-67 (225) 10 COG2821 MltA Membrane-bound ly 8.1 1.8E+02 0.0045 14.0 1.1 7 36-42 263-269 (373) No 1 >KOG2313 consensus Probab=42.36 E-value=6.7 Score=21.13 Aligned_cols=14 Identities=57% Similarity=0.719 Sum_probs=11.6 Q ss_pred HHHHHHHCCCHHHH Q ss_conf 45556526501303 Q 537021.9.peg.6 4 RIVSSIFSGQSLVY 17 (45) Q Consensus 4 rivssifsgqslvy 17 (45) ++||+-|.|+|+|- T Consensus 56 ~vVS~~FeG~s~v~ 69 (100) T KOG2313 56 EVVSSAFEGLSLVK 69 (100) T ss_pred EEECHHHCCCCHHH T ss_conf 98334447741889 No 2 >COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms] Probab=32.97 E-value=11 Score=19.98 Aligned_cols=35 Identities=37% Similarity=0.481 Sum_probs=19.3 Q ss_pred HHHHHHHCCCHHHHHHHH----HHHEEECCCCEEEEEEE Q ss_conf 455565265013033000----11203046532899999 Q 537021.9.peg.6 4 RIVSSIFSGQSLVYEKIL----FEIEFLGDHHRYACFIF 38 (45) Q Consensus 4 rivssifsgqslvyekil----feieflgdhhryacfif 38 (45) +|||.-|.|+|+|-.--+ ..-|+-+.-|-.++-.+ T Consensus 44 ~IVS~~F~G~s~v~rHr~V~~~L~del~~~iHALal~t~ 82 (90) T COG0271 44 VIVSEAFQGKSLVARHRLVYSALKDELSGGIHALALHTY 82 (90) T ss_pred EEECHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE T ss_conf 997655488529999999999999998353200476731 No 3 >PHA02099 hypothetical protein Probab=28.52 E-value=9.6 Score=20.34 Aligned_cols=36 Identities=19% Similarity=0.456 Sum_probs=22.7 Q ss_pred HHCCCHHHHHHHHHHHEEECCCCEEEEEEEEECCCC Q ss_conf 526501303300011203046532899999703788 Q 537021.9.peg.6 9 IFSGQSLVYEKILFEIEFLGDHHRYACFIFFKENYP 44 (45) Q Consensus 9 ifsgqslvyekilfeieflgdhhryacfiffkenyp 44 (45) -|||...++..--+.-|....-|||+|+|.-.-.-| T Consensus 40 ~~~g~diifha~gy~p~ly~e~~r~~~yi~ntvk~p 75 (84) T PHA02099 40 NFEGVDIVFHAEGYNPDLYAELKRHVCYIVNTVKTP 75 (84) T ss_pred ECCCCCEEEECCCCCHHHHHHHHHHHEEEEEEEECC T ss_conf 057742899857799789999987630455345058 No 4 >KOG1172 consensus Probab=20.57 E-value=44 Score=17.03 Aligned_cols=22 Identities=50% Similarity=0.819 Sum_probs=16.6 Q ss_pred HHHHHHHCCCH----------HHHHHHHHHHE Q ss_conf 45556526501----------30330001120 Q 537021.9.peg.6 4 RIVSSIFSGQS----------LVYEKILFEIE 25 (45) Q Consensus 4 rivssifsgqs----------lvyekilfeie 25 (45) -|+-|+|+||. +|||+++|++- T Consensus 405 GiifslfggQPLlIlg~TgP~lVfe~~lf~f~ 436 (876) T KOG1172 405 GIIFSLFGGQPLLILGVTGPLLVFEKALFKFC 436 (876) T ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH T ss_conf 99999725886599835732999999999998 No 5 >pfam05613 Herpes_U15 Human herpesvirus U15 protein. Probab=19.03 E-value=44 Score=17.02 Aligned_cols=23 Identities=39% Similarity=0.701 Sum_probs=17.4 Q ss_pred HHHHHHCCCHHHHHHHHHHHEEE Q ss_conf 55565265013033000112030 Q 537021.9.peg.6 5 IVSSIFSGQSLVYEKILFEIEFL 27 (45) Q Consensus 5 ivssifsgqslvyekilfeiefl 27 (45) -.|.|||.-..+|-|-||...|- T Consensus 23 slsni~sk~eiiyikylfkmdf~ 45 (110) T pfam05613 23 SLSNIFSKIEIIYIKYLFKMDFN 45 (110) T ss_pred HHHHHHHHHHHHHHHHHHHCCHH T ss_conf 99988633032255587863438 No 6 >pfam00955 HCO3_cotransp HCO3- transporter family. This family contains Band 3 anion exchange proteins that exchange CL-/HCO3-. This family also includes cotransporters of Na+/HCO3-. Probab=17.25 E-value=57 Score=16.43 Aligned_cols=21 Identities=48% Similarity=0.806 Sum_probs=14.5 Q ss_pred HHHHHHHCCCHH----------HHHHHHHHH Q ss_conf 455565265013----------033000112 Q 537021.9.peg.6 4 RIVSSIFSGQSL----------VYEKILFEI 24 (45) Q Consensus 4 rivssifsgqsl----------vyekilfei 24 (45) -++-|+|+||.| ++++++|++ T Consensus 78 Giifslf~GQPL~Ilg~TGPi~vf~~~ly~~ 108 (501) T pfam00955 78 GIVFSLLAGQPLLILGSTGPLLVFEEALFNF 108 (501) T ss_pred HHHHHHHCCCCEEEEECCCHHHHHHHHHHHH T ss_conf 9999983369837660656099999999999 No 7 >COG5663 Uncharacterized conserved protein [Function unknown] Probab=11.44 E-value=89 Score=15.47 Aligned_cols=39 Identities=26% Similarity=0.482 Sum_probs=29.7 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHEEECCCCEEEE------EEEEECCCC Q ss_conf 5445556526501303300011203046532899------999703788 Q 537021.9.peg.6 2 VYRIVSSIFSGQSLVYEKILFEIEFLGDHHRYAC------FIFFKENYP 44 (45) Q Consensus 2 vyrivssifsgqslvyekilfeieflgdhhryac------fiffkenyp 44 (45) .+||.-++|--|++-|.. +|.+|-||.-.| -+||..++| T Consensus 100 l~~iT~~~l~~q~ih~~~----l~i~g~h~KV~~vrth~idlf~ed~~~ 144 (194) T COG5663 100 LTRITYAWLFIQNIHYDH----LEIVGLHHKVEAVRTHNIDLFFEDSHD 144 (194) T ss_pred HHHHHHHHHHHHCCCHHH----HHHHCCCCCCHHHHHHCCCCCCCCCCC T ss_conf 999999999874364145----410125663131676166710101472 No 8 >KOG0729 consensus Probab=11.24 E-value=1.3e+02 Score=14.70 Aligned_cols=19 Identities=47% Similarity=0.868 Sum_probs=13.2 Q ss_pred HHHHHEEECCCCEEEEEEEEECC Q ss_conf 00112030465328999997037 Q 537021.9.peg.6 20 ILFEIEFLGDHHRYACFIFFKEN 42 (45) Q Consensus 20 ilfeieflgdhhryacfiffken 42 (45) -|||.. ...-||.|||.|- T Consensus 261 ElFeMA----r~KKACiiFFDEi 279 (435) T KOG0729 261 ELFEMA----RTKKACIIFFDEI 279 (435) T ss_pred HHHHHH----CCCCEEEEEEECC T ss_conf 999985----2365279984101 No 9 >TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly. Probab=9.99 E-value=99 Score=15.24 Aligned_cols=32 Identities=34% Similarity=0.417 Sum_probs=24.5 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHEEECCCCEEEEE Q ss_conf 54455565265013033000112030465328999 Q 537021.9.peg.6 2 VYRIVSSIFSGQSLVYEKILFEIEFLGDHHRYACF 36 (45) Q Consensus 2 vyrivssifsgqslvyekilfeieflgdhhryacf 36 (45) |.-++|||=||..+.-||.+ +.+.+.+..||. T Consensus 36 ~lNfmsspGSGKT~LiEk~~---~~~~~~~K~Avi 67 (225) T TIGR00073 36 VLNFMSSPGSGKTTLIEKLI---ERLDDEVKIAVI 67 (225) T ss_pred EEEECCCCCCCHHHHHHHHH---HHHCCCCCEEEE T ss_conf 99802588611589999999---984578978999 No 10 >COG2821 MltA Membrane-bound lytic murein transglycosylase [Cell envelope biogenesis, outer membrane] Probab=8.07 E-value=1.8e+02 Score=13.95 Aligned_cols=7 Identities=71% Similarity=1.492 Sum_probs=0.0 Q ss_pred EEEEECC Q ss_conf 9997037 Q 537021.9.peg.6 36 FIFFKEN 42 (45) Q Consensus 36 fiffken 42 (45) ||||||. T Consensus 263 fVFFke~ 269 (373) T COG2821 263 FVFFKET 269 (373) T ss_pred EEEEECC T ss_conf 4998338 Done!