Query         537021.9.peg.634_1
Match_columns 45
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 39220
Date          Wed May 25 00:44:55 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_634.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG2313 consensus               42.4     6.7 0.00017   21.1  -0.1   14    4-17     56-69  (100)
  2 COG0271 BolA Stress-induced mo  33.0      11 0.00029   20.0  -0.2   35    4-38     44-82  (90)
  3 PHA02099 hypothetical protein   28.5     9.6 0.00025   20.3  -1.2   36    9-44     40-75  (84)
  4 KOG1172 consensus               20.6      44  0.0011   17.0   1.0   22    4-25    405-436 (876)
  5 pfam05613 Herpes_U15 Human her  19.0      44  0.0011   17.0   0.7   23    5-27     23-45  (110)
  6 pfam00955 HCO3_cotransp HCO3-   17.2      57  0.0015   16.4   1.0   21    4-24     78-108 (501)
  7 COG5663 Uncharacterized conser  11.4      89  0.0023   15.5   0.6   39    2-44    100-144 (194)
  8 KOG0729 consensus               11.2 1.3E+02  0.0032   14.7   1.3   19   20-42    261-279 (435)
  9 TIGR00073 hypB hydrogenase acc  10.0      99  0.0025   15.2   0.4   32    2-36     36-67  (225)
 10 COG2821 MltA Membrane-bound ly   8.1 1.8E+02  0.0045   14.0   1.1    7   36-42    263-269 (373)

No 1  
>KOG2313 consensus
Probab=42.36  E-value=6.7  Score=21.13  Aligned_cols=14  Identities=57%  Similarity=0.719  Sum_probs=11.6

Q ss_pred             HHHHHHHCCCHHHH
Q ss_conf             45556526501303
Q 537021.9.peg.6    4 RIVSSIFSGQSLVY   17 (45)
Q Consensus         4 rivssifsgqslvy   17 (45)
                      ++||+-|.|+|+|-
T Consensus        56 ~vVS~~FeG~s~v~   69 (100)
T KOG2313          56 EVVSSAFEGLSLVK   69 (100)
T ss_pred             EEECHHHCCCCHHH
T ss_conf             98334447741889


No 2  
>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]
Probab=32.97  E-value=11  Score=19.98  Aligned_cols=35  Identities=37%  Similarity=0.481  Sum_probs=19.3

Q ss_pred             HHHHHHHCCCHHHHHHHH----HHHEEECCCCEEEEEEE
Q ss_conf             455565265013033000----11203046532899999
Q 537021.9.peg.6    4 RIVSSIFSGQSLVYEKIL----FEIEFLGDHHRYACFIF   38 (45)
Q Consensus         4 rivssifsgqslvyekil----feieflgdhhryacfif   38 (45)
                      +|||.-|.|+|+|-.--+    ..-|+-+.-|-.++-.+
T Consensus        44 ~IVS~~F~G~s~v~rHr~V~~~L~del~~~iHALal~t~   82 (90)
T COG0271          44 VIVSEAFQGKSLVARHRLVYSALKDELSGGIHALALHTY   82 (90)
T ss_pred             EEECHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf             997655488529999999999999998353200476731


No 3  
>PHA02099 hypothetical protein
Probab=28.52  E-value=9.6  Score=20.34  Aligned_cols=36  Identities=19%  Similarity=0.456  Sum_probs=22.7

Q ss_pred             HHCCCHHHHHHHHHHHEEECCCCEEEEEEEEECCCC
Q ss_conf             526501303300011203046532899999703788
Q 537021.9.peg.6    9 IFSGQSLVYEKILFEIEFLGDHHRYACFIFFKENYP   44 (45)
Q Consensus         9 ifsgqslvyekilfeieflgdhhryacfiffkenyp   44 (45)
                      -|||...++..--+.-|....-|||+|+|.-.-.-|
T Consensus        40 ~~~g~diifha~gy~p~ly~e~~r~~~yi~ntvk~p   75 (84)
T PHA02099         40 NFEGVDIVFHAEGYNPDLYAELKRHVCYIVNTVKTP   75 (84)
T ss_pred             ECCCCCEEEECCCCCHHHHHHHHHHHEEEEEEEECC
T ss_conf             057742899857799789999987630455345058


No 4  
>KOG1172 consensus
Probab=20.57  E-value=44  Score=17.03  Aligned_cols=22  Identities=50%  Similarity=0.819  Sum_probs=16.6

Q ss_pred             HHHHHHHCCCH----------HHHHHHHHHHE
Q ss_conf             45556526501----------30330001120
Q 537021.9.peg.6    4 RIVSSIFSGQS----------LVYEKILFEIE   25 (45)
Q Consensus         4 rivssifsgqs----------lvyekilfeie   25 (45)
                      -|+-|+|+||.          +|||+++|++-
T Consensus       405 GiifslfggQPLlIlg~TgP~lVfe~~lf~f~  436 (876)
T KOG1172         405 GIIFSLFGGQPLLILGVTGPLLVFEKALFKFC  436 (876)
T ss_pred             HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf             99999725886599835732999999999998


No 5  
>pfam05613 Herpes_U15 Human herpesvirus U15 protein.
Probab=19.03  E-value=44  Score=17.02  Aligned_cols=23  Identities=39%  Similarity=0.701  Sum_probs=17.4

Q ss_pred             HHHHHHCCCHHHHHHHHHHHEEE
Q ss_conf             55565265013033000112030
Q 537021.9.peg.6    5 IVSSIFSGQSLVYEKILFEIEFL   27 (45)
Q Consensus         5 ivssifsgqslvyekilfeiefl   27 (45)
                      -.|.|||.-..+|-|-||...|-
T Consensus        23 slsni~sk~eiiyikylfkmdf~   45 (110)
T pfam05613        23 SLSNIFSKIEIIYIKYLFKMDFN   45 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             99988633032255587863438


No 6  
>pfam00955 HCO3_cotransp HCO3- transporter family. This family contains Band 3 anion exchange proteins that exchange CL-/HCO3-. This family also includes cotransporters of Na+/HCO3-.
Probab=17.25  E-value=57  Score=16.43  Aligned_cols=21  Identities=48%  Similarity=0.806  Sum_probs=14.5

Q ss_pred             HHHHHHHCCCHH----------HHHHHHHHH
Q ss_conf             455565265013----------033000112
Q 537021.9.peg.6    4 RIVSSIFSGQSL----------VYEKILFEI   24 (45)
Q Consensus         4 rivssifsgqsl----------vyekilfei   24 (45)
                      -++-|+|+||.|          ++++++|++
T Consensus        78 Giifslf~GQPL~Ilg~TGPi~vf~~~ly~~  108 (501)
T pfam00955        78 GIVFSLLAGQPLLILGSTGPLLVFEEALFNF  108 (501)
T ss_pred             HHHHHHHCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf             9999983369837660656099999999999


No 7  
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=11.44  E-value=89  Score=15.47  Aligned_cols=39  Identities=26%  Similarity=0.482  Sum_probs=29.7

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHEEECCCCEEEE------EEEEECCCC
Q ss_conf             5445556526501303300011203046532899------999703788
Q 537021.9.peg.6    2 VYRIVSSIFSGQSLVYEKILFEIEFLGDHHRYAC------FIFFKENYP   44 (45)
Q Consensus         2 vyrivssifsgqslvyekilfeieflgdhhryac------fiffkenyp   44 (45)
                      .+||.-++|--|++-|..    +|.+|-||.-.|      -+||..++|
T Consensus       100 l~~iT~~~l~~q~ih~~~----l~i~g~h~KV~~vrth~idlf~ed~~~  144 (194)
T COG5663         100 LTRITYAWLFIQNIHYDH----LEIVGLHHKVEAVRTHNIDLFFEDSHD  144 (194)
T ss_pred             HHHHHHHHHHHHCCCHHH----HHHHCCCCCCHHHHHHCCCCCCCCCCC
T ss_conf             999999999874364145----410125663131676166710101472


No 8  
>KOG0729 consensus
Probab=11.24  E-value=1.3e+02  Score=14.70  Aligned_cols=19  Identities=47%  Similarity=0.868  Sum_probs=13.2

Q ss_pred             HHHHHEEECCCCEEEEEEEEECC
Q ss_conf             00112030465328999997037
Q 537021.9.peg.6   20 ILFEIEFLGDHHRYACFIFFKEN   42 (45)
Q Consensus        20 ilfeieflgdhhryacfiffken   42 (45)
                      -|||..    ...-||.|||.|-
T Consensus       261 ElFeMA----r~KKACiiFFDEi  279 (435)
T KOG0729         261 ELFEMA----RTKKACIIFFDEI  279 (435)
T ss_pred             HHHHHH----CCCCEEEEEEECC
T ss_conf             999985----2365279984101


No 9  
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=9.99  E-value=99  Score=15.24  Aligned_cols=32  Identities=34%  Similarity=0.417  Sum_probs=24.5

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHEEECCCCEEEEE
Q ss_conf             54455565265013033000112030465328999
Q 537021.9.peg.6    2 VYRIVSSIFSGQSLVYEKILFEIEFLGDHHRYACF   36 (45)
Q Consensus         2 vyrivssifsgqslvyekilfeieflgdhhryacf   36 (45)
                      |.-++|||=||..+.-||.+   +.+.+.+..||.
T Consensus        36 ~lNfmsspGSGKT~LiEk~~---~~~~~~~K~Avi   67 (225)
T TIGR00073        36 VLNFMSSPGSGKTTLIEKLI---ERLDDEVKIAVI   67 (225)
T ss_pred             EEEECCCCCCCHHHHHHHHH---HHHCCCCCEEEE
T ss_conf             99802588611589999999---984578978999


No 10 
>COG2821 MltA Membrane-bound lytic murein transglycosylase [Cell envelope biogenesis, outer membrane]
Probab=8.07  E-value=1.8e+02  Score=13.95  Aligned_cols=7  Identities=71%  Similarity=1.492  Sum_probs=0.0

Q ss_pred             EEEEECC
Q ss_conf             9997037
Q 537021.9.peg.6   36 FIFFKEN   42 (45)
Q Consensus        36 fiffken   42 (45)
                      ||||||.
T Consensus       263 fVFFke~  269 (373)
T COG2821         263 FVFFKET  269 (373)
T ss_pred             EEEEECC
T ss_conf             4998338


Done!