Query 537021.9.peg.634_1 Match_columns 45 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 24 23:40:42 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_634.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1ny8_A Protein YRBA; structure 7.0 66 0.0028 15.0 -0.4 13 4-16 36-48 (97) 2 2kz0_A BOLA family protein; BO 6.7 82 0.0034 14.5 -0.1 14 4-17 39-52 (76) 3 3o2e_A BOLA-like protein; ssgc 6.3 91 0.0038 14.3 -0.0 14 4-17 57-70 (105) 4 1mkf_A M3; decoy receptor, PSI 5.7 72 0.003 14.8 -0.8 19 12-30 364-382 (382) 5 1ogd_A High affinity ribose tr 5.1 1.2E+02 0.0051 13.7 0.1 20 22-41 109-128 (131) 6 2dhm_A Protein BOLA; stationar 5.0 1.2E+02 0.0048 13.8 -0.1 14 4-17 49-62 (107) 7 1xs3_A Hypothetical protein XC 4.9 1.2E+02 0.0049 13.8 -0.2 33 4-38 37-75 (80) 8 3c5p_A Protein BAS0735 of unkn 4.6 1.4E+02 0.0059 13.4 0.1 18 25-42 145-162 (197) 9 2nys_A AGR_C_3712P; SSPB, stri 4.1 2.5E+02 0.01 12.1 2.0 16 26-44 33-48 (176) 10 1kdx_A CBP; complex (transcrip 3.9 2E+02 0.0084 12.6 0.4 13 1-13 18-30 (81) No 1 >1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1 Probab=6.97 E-value=66 Score=15.04 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=9.8 Q ss_pred HHHHHHHCCCHHH Q ss_conf 4555652650130 Q 537021.9.peg.6 4 RIVSSIFSGQSLV 16 (45) Q Consensus 4 rivssifsgqslv 16 (45) .|||..|.|.|+| T Consensus 36 ~IvS~~F~g~s~v 48 (97) T 1ny8_A 36 IAVGELFDGMSRV 48 (97) T ss_dssp EEESSTTSSSCHH T ss_pred EEECHHHCCCCHH T ss_conf 9983776899889 No 2 >2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis} Probab=6.68 E-value=82 Score=14.55 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=10.4 Q ss_pred HHHHHHHCCCHHHH Q ss_conf 45556526501303 Q 537021.9.peg.6 4 RIVSSIFSGQSLVY 17 (45) Q Consensus 4 rivssifsgqslvy 17 (45) .|||..|.|.|+|- T Consensus 39 ~IvS~~F~g~s~v~ 52 (76) T 2kz0_A 39 KVISSQFQGKSKLE 52 (76) T ss_dssp EEEEGGGTTCCHHH T ss_pred EEECHHHCCCCHHH T ss_conf 99726739998999 No 3 >3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis} Probab=6.30 E-value=91 Score=14.33 Aligned_cols=14 Identities=43% Similarity=0.591 Sum_probs=10.8 Q ss_pred HHHHHHHCCCHHHH Q ss_conf 45556526501303 Q 537021.9.peg.6 4 RIVSSIFSGQSLVY 17 (45) Q Consensus 4 rivssifsgqslvy 17 (45) .|||..|.|.|++- T Consensus 57 ~IvS~~F~g~s~v~ 70 (105) T 3o2e_A 57 YIVSQQFEGKGLLD 70 (105) T ss_dssp EEECGGGTTCCHHH T ss_pred EEECHHHCCCCHHH T ss_conf 99846768997899 No 4 >1mkf_A M3; decoy receptor, PSI, protein structure initiative; 2.10A {Murid herpesvirus 4} SCOP: b.116.1.1 PDB: 1ml0_A 2nyz_A 2nz1_A Probab=5.69 E-value=72 Score=14.82 Aligned_cols=19 Identities=42% Similarity=0.845 Sum_probs=9.1 Q ss_pred CCHHHHHHHHHHHEEECCC Q ss_conf 5013033000112030465 Q 537021.9.peg.6 12 GQSLVYEKILFEIEFLGDH 30 (45) Q Consensus 12 gqslvyekilfeieflgdh 30 (45) |-|+..|.--..||++||| T Consensus 364 Gvsi~~eGQq~Ri~Y~Gdh 382 (382) T 1mkf_A 364 GVSLMLEGQQYRLEYFGDH 382 (382) T ss_dssp EEEEEETTEEEEEESSCCC T ss_pred EEEEEECCCEEEEECCCCC T ss_conf 6999974700021012589 No 5 >1ogd_A High affinity ribose transport protein RBSD; sugar transport; HET: RIP; 1.95A {Bacillus subtilis} SCOP: c.133.1.1 PDB: 1ogc_A* 1oge_A* 1ogf_A Probab=5.14 E-value=1.2e+02 Score=13.70 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=14.9 Q ss_pred HHHEEECCCCEEEEEEEEEC Q ss_conf 11203046532899999703 Q 537021.9.peg.6 22 FEIEFLGDHHRYACFIFFKE 41 (45) Q Consensus 22 feieflgdhhryacfiffke 41 (45) |-+---|+-..|+|||+-|- T Consensus 109 ~avV~TGE~~~YgNiIL~kG 128 (131) T 1ogd_A 109 KAVIRTGEFTPYANCILQAG 128 (131) T ss_dssp SEEEECCCCSTTCCEEEEEC T ss_pred EEEEECCCCCCEEEEEEECC T ss_conf 69998289976447999748 No 6 >2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural genomics, NPPSFA; NMR {Escherichia coli str} Probab=4.99 E-value=1.2e+02 Score=13.80 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=11.0 Q ss_pred HHHHHHHCCCHHHH Q ss_conf 45556526501303 Q 537021.9.peg.6 4 RIVSSIFSGQSLVY 17 (45) Q Consensus 4 rivssifsgqslvy 17 (45) .|||..|.|.+++- T Consensus 49 ~IvS~~F~g~s~i~ 62 (107) T 2dhm_A 49 VLVSDRFTGERFLN 62 (107) T ss_dssp EEECGGGSSCCSSH T ss_pred EEEECCCCCCCHHH T ss_conf 99867536887899 No 7 >1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic} Probab=4.89 E-value=1.2e+02 Score=13.76 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=19.5 Q ss_pred HHHHHHHCCCHH------HHHHHHHHHEEECCCCEEEEEEE Q ss_conf 455565265013------03300011203046532899999 Q 537021.9.peg.6 4 RIVSSIFSGQSL------VYEKILFEIEFLGDHHRYACFIF 38 (45) Q Consensus 4 rivssifsgqsl------vyekilfeieflgdhhryacfif 38 (45) .|||..|.|.|+ ||.-+--+ +-|.-|-.+.--+ T Consensus 37 ~IvS~~F~g~~~v~Rhr~Vy~~L~~~--~~~~iHAlsi~t~ 75 (80) T 1xs3_A 37 TVVSPAFVGKAPLARHRMVYATLGEL--MGGAIHALQLKTL 75 (80) T ss_dssp EEECGGGCSSCCHHHHHHHHHHTTST--TTTCCSCCEEEEE T ss_pred EEECHHHCCCCHHHHHHHHHHHHHHH--HCCCCCEEEEEEC T ss_conf 99636759998899999999999999--7699724787807 No 8 >3c5p_A Protein BAS0735 of unknown function; 2-layer beta-sheet, structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus anthracis str} Probab=4.58 E-value=1.4e+02 Score=13.36 Aligned_cols=18 Identities=33% Similarity=0.960 Sum_probs=13.7 Q ss_pred EEECCCCEEEEEEEEECC Q ss_conf 030465328999997037 Q 537021.9.peg.6 25 EFLGDHHRYACFIFFKEN 42 (45) Q Consensus 25 eflgdhhryacfiffken 42 (45) ..-|.|.++.||-|+|.+ T Consensus 145 ~i~G~HD~fP~~EfYkq~ 162 (197) T 3c5p_A 145 DVQGEHDGFPCFEFYKQV 162 (197) T ss_dssp EEEEEECSCSEEEEEEEE T ss_pred EEEECCCCCCCEEEEEEC T ss_conf 875223798730468815 No 9 >2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88, structural genomics, PSI-2, protein structure initiative; 2.70A {Agrobacterium tumefaciens str} SCOP: b.136.1.2 Probab=4.15 E-value=2.5e+02 Score=12.12 Aligned_cols=16 Identities=44% Similarity=0.777 Sum_probs=10.4 Q ss_pred EECCCCEEEEEEEEECCCC Q ss_conf 3046532899999703788 Q 537021.9.peg.6 26 FLGDHHRYACFIFFKENYP 44 (45) Q Consensus 26 flgdhhryacfiffkenyp 44 (45) .-||||-| |-|..++| T Consensus 33 lpg~hHfY---Itf~t~~p 48 (176) T 2nys_A 33 LPGDHHFF---ITFLTGAP 48 (176) T ss_dssp CCTTCCEE---EEEESSST T ss_pred CCCCCEEE---EEEECCCC T ss_conf 99886699---99976999 No 10 >1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B Probab=3.92 E-value=2e+02 Score=12.60 Aligned_cols=13 Identities=31% Similarity=0.623 Sum_probs=10.2 Q ss_pred CHHHHHHHHHCCC Q ss_conf 9544555652650 Q 537021.9.peg.6 1 MVYRIVSSIFSGQ 13 (45) Q Consensus 1 mvyrivssifsgq 13 (45) ||-+||++||.-+ T Consensus 18 lV~KLv~aIfP~p 30 (81) T 1kdx_A 18 LVHKLVQAIFPTP 30 (81) T ss_dssp HHHHHHHHHSCCS T ss_pred HHHHHHHHHCCCC T ss_conf 9999998855899 Done!