Query 537021.9.peg.634_1
Match_columns 45
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed May 25 00:40:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_634.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ny8a_ d.52.6.1 (A:) Hypothet 13.2 16 0.0012 16.9 -0.4 13 4-16 36-48 (97)
2 d1mkfa_ b.116.1.1 (A:) Viral c 5.8 41 0.003 14.9 -0.8 19 12-30 353-371 (371)
3 d1ogda_ c.133.1.1 (A:) Ribose 4.6 81 0.0059 13.4 0.1 20 22-41 109-128 (131)
4 d2nysa1 b.136.1.2 (A:3-119) Un 3.2 1.8E+02 0.013 11.7 2.0 16 26-44 31-46 (117)
5 d1smya1 d.74.3.1 (A:1-49,A:173 3.1 67 0.0049 13.8 -1.4 23 7-29 59-81 (106)
6 d2idga1 a.184.1.1 (A:1-160) Hy 3.1 1.5E+02 0.011 12.1 0.3 10 1-10 7-16 (160)
7 d1sb0a_ a.12.1.1 (A:) Kix doma 3.0 1.5E+02 0.011 12.0 0.3 13 1-13 18-30 (87)
8 d1qnta1 a.4.2.1 (A:92-176) O6- 2.9 1.8E+02 0.013 11.6 0.6 23 2-24 8-30 (85)
9 d1sfea1 a.4.2.1 (A:93-176) Ada 2.7 1.7E+02 0.012 11.7 0.3 23 2-24 8-30 (84)
10 d2foka1 a.4.5.12 (A:5-143) Res 2.6 2E+02 0.015 11.3 0.6 16 6-21 19-34 (139)
No 1
>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}
Probab=13.18 E-value=16 Score=16.93 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=10.3
Q ss_pred HHHHHHHCCCHHH
Q ss_conf 4555652650130
Q 537021.9.peg.6 4 RIVSSIFSGQSLV 16 (45)
Q Consensus 4 rivssifsgqslv 16 (45)
.|||+.|.|.|+|
T Consensus 36 ~IvS~~F~g~s~v 48 (97)
T d1ny8a_ 36 IAVGELFDGMSRV 48 (97)
T ss_dssp EEESSTTSSSCHH
T ss_pred EEECHHHCCCCHH
T ss_conf 9983776899889
No 2
>d1mkfa_ b.116.1.1 (A:) Viral chemokine binding protein m3 {Murid herpesvirus 4, MuHV-4 [TaxId: 33708]}
Probab=5.75 E-value=41 Score=14.85 Aligned_cols=19 Identities=42% Similarity=0.845 Sum_probs=9.1
Q ss_pred CCHHHHHHHHHHHEEECCC
Q ss_conf 5013033000112030465
Q 537021.9.peg.6 12 GQSLVYEKILFEIEFLGDH 30 (45)
Q Consensus 12 gqslvyekilfeieflgdh 30 (45)
|-|+..|.--..||++|||
T Consensus 353 Gvsi~~eGQq~Ri~Y~Gdh 371 (371)
T d1mkfa_ 353 GVSLMLEGQQYRLEYFGDH 371 (371)
T ss_dssp EEEEEETTEEEEEESSCCC
T ss_pred EEEEEECCCEEEEECCCCC
T ss_conf 6999974700021012589
No 3
>d1ogda_ c.133.1.1 (A:) Ribose transport protein RbsD {Bacillus subtilis [TaxId: 1423]}
Probab=4.55 E-value=81 Score=13.36 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=14.3
Q ss_pred HHHEEECCCCEEEEEEEEEC
Q ss_conf 11203046532899999703
Q 537021.9.peg.6 22 FEIEFLGDHHRYACFIFFKE 41 (45)
Q Consensus 22 feieflgdhhryacfiffke 41 (45)
+-+---|+-..|+|+|+-|-
T Consensus 109 ~aVV~TGE~~~Y~NiIL~kG 128 (131)
T d1ogda_ 109 KAVIRTGEFTPYANCILQAG 128 (131)
T ss_dssp SEEEECCCCSTTCCEEEEEC
T ss_pred EEEEECCCCCCEEEEEEECC
T ss_conf 09998689975447999748
No 4
>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p {Agrobacterium tumefaciens [TaxId: 358]}
Probab=3.20 E-value=1.8e+02 Score=11.65 Aligned_cols=16 Identities=38% Similarity=0.713 Sum_probs=9.8
Q ss_pred EECCCCEEEEEEEEECCCC
Q ss_conf 3046532899999703788
Q 537021.9.peg.6 26 FLGDHHRYACFIFFKENYP 44 (45)
Q Consensus 26 flgdhhryacfiffkenyp 44 (45)
.-|+||-|-. |+.++|
T Consensus 31 Lpg~hHfyIT---F~T~~~ 46 (117)
T d2nysa1 31 LPGDHHFFIT---FLTGAP 46 (117)
T ss_dssp CCTTCCEEEE---EESSST
T ss_pred CCCCCEEEEE---EECCCC
T ss_conf 9998489999---974999
No 5
>d1smya1 d.74.3.1 (A:1-49,A:173-229) RNA polymerase alpha {Thermus thermophilus [TaxId: 274]}
Probab=3.11 E-value=67 Score=13.77 Aligned_cols=23 Identities=22% Similarity=0.149 Sum_probs=16.7
Q ss_pred HHHHCCCHHHHHHHHHHHEEECC
Q ss_conf 56526501303300011203046
Q 537021.9.peg.6 7 SSIFSGQSLVYEKILFEIEFLGD 29 (45)
Q Consensus 7 ssifsgqslvyekilfeieflgd 29 (45)
.+.-.|+..-|||+.+||+--|-
T Consensus 59 e~~rvg~~~d~dkL~LeI~TnGs 81 (106)
T d1smya1 59 EDTRLGQRTDLDKLTLRIWTDGS 81 (106)
T ss_dssp EECCCSSCSCCEEEEEEEEECSS
T ss_pred CCCCCCCCCCEEEEEEEEEECCC
T ss_conf 01031765423689999995897
No 6
>d2idga1 a.184.1.1 (A:1-160) Hypothetical protein AF0160 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.09 E-value=1.5e+02 Score=12.08 Aligned_cols=10 Identities=50% Similarity=0.790 Sum_probs=8.1
Q ss_pred CHHHHHHHHH
Q ss_conf 9544555652
Q 537021.9.peg.6 1 MVYRIVSSIF 10 (45)
Q Consensus 1 mvyrivssif 10 (45)
++|++.|++|
T Consensus 7 ~~Y~lls~lF 16 (160)
T d2idga1 7 KVYATLSKIF 16 (160)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 7
>d1sb0a_ a.12.1.1 (A:) Kix domain of CBP (creb binding protein) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.99 E-value=1.5e+02 Score=11.98 Aligned_cols=13 Identities=31% Similarity=0.623 Sum_probs=9.9
Q ss_pred CHHHHHHHHHCCC
Q ss_conf 9544555652650
Q 537021.9.peg.6 1 MVYRIVSSIFSGQ 13 (45)
Q Consensus 1 mvyrivssifsgq 13 (45)
||-+||++||.-.
T Consensus 18 lV~KLv~aIfP~p 30 (87)
T d1sb0a_ 18 LVHKLVQAIFPTP 30 (87)
T ss_dssp HHHHHHHHHSCCS
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999998756999
No 8
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.88 E-value=1.8e+02 Score=11.65 Aligned_cols=23 Identities=9% Similarity=0.365 Sum_probs=18.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 54455565265013033000112
Q 537021.9.peg.6 2 VYRIVSSIFSGQSLVYEKILFEI 24 (45)
Q Consensus 2 vyrivssifsgqslvyekilfei 24 (45)
||+.++.|-.|+..-|..|--.+
T Consensus 8 vw~~l~~IP~G~v~TYg~iA~~~ 30 (85)
T d1qnta1 8 LWKLLKVVKFGEVISYQQLAALA 30 (85)
T ss_dssp HHHHHHHCCTTCCEEHHHHHHHT
T ss_pred HHHHHHCCCCCCCCCHHHHHHHC
T ss_conf 99999269999836399999773
No 9
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=2.74 E-value=1.7e+02 Score=11.74 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=17.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 54455565265013033000112
Q 537021.9.peg.6 2 VYRIVSSIFSGQSLVYEKILFEI 24 (45)
Q Consensus 2 vyrivssifsgqslvyekilfei 24 (45)
||+.+..|-.|+..-|..|--.+
T Consensus 8 V~~~l~~Ip~G~v~TYg~iA~~~ 30 (84)
T d1sfea1 8 VWQALRTIPCGETVSYQQLANAI 30 (84)
T ss_dssp HHHHHTTSCTTCCEEHHHHHHHT
T ss_pred HHHHHHCCCCCCEEEHHHHHHHH
T ss_conf 99999749998736299999981
No 10
>d2foka1 a.4.5.12 (A:5-143) Restriction endonuclease FokI, N-terminal (recognition) domain {Flavobacterium okeanokoites [TaxId: 244]}
Probab=2.61 E-value=2e+02 Score=11.34 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHCCCHHHHHHHH
Q ss_conf 5565265013033000
Q 537021.9.peg.6 6 VSSIFSGQSLVYEKIL 21 (45)
Q Consensus 6 vssifsgqslvyekil 21 (45)
|-+||..+|.+|.+..
T Consensus 19 Vv~IFd~~Sk~hq~L~ 34 (139)
T d2foka1 19 VVQVFDRNSKVHNEVK 34 (139)
T ss_dssp HHTTSCTTSHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH
T ss_conf 9999656109999998
Done!