RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.634_1 (45 letters) >gnl|CDD|129183 TIGR00073, hypB, hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. Length = 207 Score = 25.8 bits (57), Expect = 2.7 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%) Query: 2 VYRIVSSIFSGQSLVYEKILFEIEFLGDHHRYAC 35 V +SS SG++ + EK+ I+ L D + A Sbjct: 24 VLNFMSSPGSGKTTLIEKL---IDNLKDEVKIAV 54 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.335 0.150 0.463 Gapped Lambda K H 0.267 0.0688 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 735,272 Number of extensions: 27811 Number of successful extensions: 85 Number of sequences better than 10.0: 1 Number of HSP's gapped: 85 Number of HSP's successfully gapped: 1 Length of query: 45 Length of database: 5,994,473 Length adjustment: 18 Effective length of query: 27 Effective length of database: 5,605,529 Effective search space: 151349283 Effective search space used: 151349283 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 50 (23.1 bits)