Query         537021.9.peg.658_1
Match_columns 40
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Tue May 24 22:10:12 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_658.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2hxj_A Hypothetical protein;   15.5      31 0.00091   17.7  -0.5   25   14-38      2-33  (56)
  2 >2qv6_A MJ0145, GTP cyclohydro  14.6 1.2E+02  0.0036   14.8   3.0   35    2-36     48-90  (141)
  3 >2o8p_A 14-3-3 domain containi  14.4      76  0.0022   15.8   1.3   16   15-30      5-20  (65)
  4 >3ftb_A Histidinol-phosphate a  13.7      89  0.0026   15.4   1.5   18   15-32      2-21  (50)
  5 >1s5j_A DNA polymerase I; repl  12.9 1.2E+02  0.0036   14.7   2.0   24   14-37     45-68  (103)
  6 >2hv8_D RAB11 family-interacti  10.4      78  0.0023   15.7   0.4   22   14-35     42-63  (64)
  7 >2d48_A Interleukin-4; four he   8.9 1.2E+02  0.0035   14.8   0.8   18   13-30    108-125 (129)
  8 >1ujl_A Potassium voltage-gate   8.5 1.3E+02  0.0039   14.6   0.9   18   13-30     12-29  (42)
  9 >3jyv_T S19E protein; eukaryot   8.4 1.6E+02  0.0046   14.2   1.3   18   11-28    122-139 (141)
 10 >2jxj_A Histone demethylase ja   7.9 1.6E+02  0.0047   14.2   1.1   22   11-32      5-31  (37)

No 1  
>>2hxj_A Hypothetical protein; APC83807, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.21A {Neisseria meningitidis MC58} (A:22-77)
Probab=15.52  E-value=31  Score=17.73  Aligned_cols=25  Identities=48%  Similarity=0.752  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHCC-------CEEEEEECC
Q ss_conf             4666555577642118-------568866224
Q 537021.9.peg.6   14 KKDFLDNIAYHIKEKY-------PFVLGIEKS   38 (40)
Q Consensus        14 kkdfldniayhikeky-------pfvlgieks   38 (40)
                      ||.-.|-||-||-.||       |..+||+++
T Consensus         2 KkkQt~~iad~iY~kydVf~~FkPLAlGi~~~   33 (56)
T 2hxj_A            2 KKKQTEXIADHIYGKYDVFKRFKPLALGIDQD   33 (56)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHTTCCBCTTHHHH
T ss_pred             HHHHHHHHHHHHHHHCCHHCCCCCCCCCHHHH
T ss_conf             25579999999998661315877830458999


No 2  
>>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii} (A:128-268)
Probab=14.65  E-value=1.2e+02  Score=14.78  Aligned_cols=35  Identities=29%  Similarity=0.452  Sum_probs=22.0

Q ss_pred             CEEEEEECCHH------HHHHHHHHHHHHHHHCCCE--EEEEE
Q ss_conf             10356302002------3466655557764211856--88662
Q 537021.9.peg.6    2 SCAFFFGGFTV------YKKDFLDNIAYHIKEKYPF--VLGIE   36 (40)
Q Consensus         2 scafffggftv------ykkdfldniayhikekypf--vlgie   36 (40)
                      +-+||.||=.+      -.++-+..+.+||++.||.  -.||-
T Consensus        48 ~l~Ff~GGDN~iav~n~~~~~~~~~~i~~I~n~~~v~lkvGIG   90 (141)
T 2qv6_A           48 ALLFFIGGDNFMAPSNGMSEEDFLDIFNRINKKYKIELKAGIG   90 (141)
T ss_dssp             CCCEEEETTEEEEECTTCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             CEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             8899735856999889864778999999877650933898654


No 3  
>>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, structural genomics, structural genomics consortium; HET: MSE; 1.82A {Cryptosporidium parvum} (A:163-227)
Probab=14.39  E-value=76  Score=15.78  Aligned_cols=16  Identities=44%  Similarity=0.816  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHCCC
Q ss_conf             6665555776421185
Q 537021.9.peg.6   15 KDFLDNIAYHIKEKYP   30 (40)
Q Consensus        15 kdfldniayhikekyp   30 (40)
                      -.|..|.||-..|||.
T Consensus         5 lgfiqnlayilsekyg   20 (65)
T 2o8p_A            5 LGFIQNLAYILSEKYG   20 (65)
T ss_dssp             HHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHHC
T ss_conf             9999989999999945


No 4  
>>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} (A:41-76,A:246-259)
Probab=13.65  E-value=89  Score=15.43  Aligned_cols=18  Identities=56%  Similarity=0.728  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHH--HCCCEE
Q ss_conf             666555577642--118568
Q 537021.9.peg.6   15 KDFLDNIAYHIK--EKYPFV   32 (40)
Q Consensus        15 kdfldniayhik--ekypfv   32 (40)
                      |.|+.||.-.||  +|||-+
T Consensus         2 KSFtnNidEaIknl~kYPD~   21 (50)
T 3ftb_A            2 KSFLNNIDEGIKNLGVYPDV   21 (50)
T ss_dssp             HHHHTTHHHHHHGGGSCCCT
T ss_pred             HHHHHHHHHHHHHCCCCCCC
T ss_conf             99999999998760369997


No 5  
>>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} (A:455-482,A:614-688)
Probab=12.86  E-value=1.2e+02  Score=14.73  Aligned_cols=24  Identities=29%  Similarity=0.481  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             466655557764211856886622
Q 537021.9.peg.6   14 KKDFLDNIAYHIKEKYPFVLGIEK   37 (40)
Q Consensus        14 kkdfldniayhikekypfvlgiek   37 (40)
                      -.+....++-+|.+++|+.|..|+
T Consensus        45 ~~d~~e~l~~~In~~~pl~LE~E~   68 (103)
T 1s5j_A           45 PKNSLENIIKWVKTTFNLDLEVDK   68 (103)
T ss_dssp             CHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred             CCCHHHHHHHHHHHHCCHHHHHHC
T ss_conf             854099999998752204544422


No 6  
>>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} (D:)
Probab=10.43  E-value=78  Score=15.70  Aligned_cols=22  Identities=32%  Similarity=0.567  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             4666555577642118568866
Q 537021.9.peg.6   14 KKDFLDNIAYHIKEKYPFVLGI   35 (40)
Q Consensus        14 kkdfldniayhikekypfvlgi   35 (40)
                      -+.++|.|--.|-|++|-.|-|
T Consensus        42 LR~YID~il~~IvE~~P~lLEv   63 (64)
T 2hv8_D           42 LQDYIDRIIVAIMETNPSILEV   63 (64)
T ss_dssp             HHHHHHHHHHHHHTTCGGGGBC
T ss_pred             HHHHHHHHHHHHHHCCCCHHCC
T ss_conf             9999999999999739633204


No 7  
>>2d48_A Interleukin-4; four helix bundle, cytokine; 1.65A {Homo sapiens} PDB: 1itl_A 1itm_A 2b90_A 1cyl_A 1hik_A 1iar_A 1rcb_A 2b8u_A 2cyk_A 2int_A 3bpl_A* 3bpn_A* 2b8y_A 1hij_A 1hzi_A 2b8z_A 1bbn_A 1bcn_A 1iti_A 2b8x_A ... (A:)
Probab=8.89  E-value=1.2e+02  Score=14.83  Aligned_cols=18  Identities=28%  Similarity=0.591  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHCCC
Q ss_conf             346665555776421185
Q 537021.9.peg.6   13 YKKDFLDNIAYHIKEKYP   30 (40)
Q Consensus        13 ykkdfldniayhikekyp   30 (40)
                      --||||+..---.+|||-
T Consensus       108 TLkdFLerLk~imqekYs  125 (129)
T 2d48_A          108 TLENFLERLKTIMREKYS  125 (129)
T ss_dssp             EHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             599999999999999876


No 8  
>>1ujl_A Potassium voltage-gated channel subfamily H member 2; two helices, amphiphatic helix, membrane protein; NMR {Synthetic} (A:)
Probab=8.51  E-value=1.3e+02  Score=14.56  Aligned_cols=18  Identities=22%  Similarity=0.421  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHCCC
Q ss_conf             346665555776421185
Q 537021.9.peg.6   13 YKKDFLDNIAYHIKEKYP   30 (40)
Q Consensus        13 ykkdfldniayhikekyp   30 (40)
                      .|-.+||+.|..|.+.|-
T Consensus        12 ~kiGWLd~La~qi~k~Y~   29 (42)
T 1ujl_A           12 SRIGWLHNLGDQIGKPYN   29 (42)
T ss_dssp             CCCCTHHHHHHHHCCSSC
T ss_pred             CCCCHHHHHHHHHCCCCC
T ss_conf             752279999999668655


No 9  
>>3jyv_T S19E protein; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} (T:)
Probab=8.39  E-value=1.6e+02  Score=14.21  Aligned_cols=18  Identities=28%  Similarity=0.193  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHC
Q ss_conf             023466655557764211
Q 537021.9.peg.6   11 TVYKKDFLDNIAYHIKEK   28 (40)
Q Consensus        11 tvykkdfldniayhikek   28 (40)
                      |---..+||+||..|.++
T Consensus       122 T~~G~~~lD~iA~~v~~~  139 (141)
T 3jyv_T          122 SENGQRDLDRIAAQTLEE  139 (141)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
T ss_conf             987899999999998862


No 10 
>>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens} (A:1-37)
Probab=7.91  E-value=1.6e+02  Score=14.16  Aligned_cols=22  Identities=36%  Similarity=0.489  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHH-----HHHCCCEE
Q ss_conf             02346665555776-----42118568
Q 537021.9.peg.6   11 TVYKKDFLDNIAYH-----IKEKYPFV   32 (40)
Q Consensus        11 tvykkdfldniayh-----ikekypfv   32 (40)
                      |--|-+|||.||--     ++-|.|.|
T Consensus         5 tRVkLnfLdqiaKfWelQGs~lKIP~v   31 (37)
T 2jxj_A            5 SRVRLDFLDQLAKFWELQGSTLKIPVV   31 (37)
T ss_dssp             SHHHHHHHHHHHHHHHHHTCCCCCCEE
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             106999999999999995998979858


Done!