Query 537021.9.peg.658_1 Match_columns 40 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Tue May 24 23:00:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_658.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1adta2 g.51.1.1 (A:266-385) F 14.3 41 0.003 15.1 1.9 28 2-30 89-116 (120) 2 d2b8ua1 a.26.1.2 (A:1-129) Int 9.8 42 0.003 15.1 0.8 18 13-30 108-125 (129) 3 d2v7fa1 a.4.5.84 (A:2-150) Rib 5.4 1.1E+02 0.0081 13.0 1.3 18 11-28 121-138 (149) 4 d1g8ka1 b.52.2.2 (A:683-825) A 4.0 1.4E+02 0.01 12.5 0.9 11 25-35 8-18 (143) 5 d2oq0a1 b.40.16.1 (A:115-202) 4.0 85 0.0062 13.6 -0.2 28 2-29 11-39 (88) 6 d1iz0a1 b.35.1.2 (A:1-98,A:270 3.7 73 0.0053 13.9 -0.8 17 22-38 48-64 (131) 7 d1k8kd2 d.198.2.1 (D:121-284) 3.5 1.7E+02 0.012 12.1 1.1 12 16-27 126-137 (164) 8 d2a9sa1 c.51.5.1 (A:1-167) Com 3.5 1E+02 0.0076 13.1 -0.1 12 2-13 47-58 (167) 9 d1jvba1 b.35.1.2 (A:1-143,A:31 2.7 1.8E+02 0.013 12.0 0.4 11 26-36 59-69 (177) 10 d1tmoa1 b.52.2.2 (A:632-798) T 2.7 2.1E+02 0.016 11.6 1.0 7 27-33 10-16 (167) No 1 >d1adta2 g.51.1.1 (A:266-385) First Zn-domain of early E2A DNA-binding protein, ADDBP {Human adenovirus type 5 [TaxId: 28285]} Probab=14.32 E-value=41 Score=15.15 Aligned_cols=28 Identities=29% Similarity=0.549 Sum_probs=21.6 Q ss_pred CEEEEEECCHHHHHHHHHHHHHHHHHCCC Q ss_conf 10356302002346665555776421185 Q 537021.9.peg.6 2 SCAFFFGGFTVYKKDFLDNIAYHIKEKYP 30 (40) Q Consensus 2 scafffggftvykkdfldniayhikekyp 30 (40) ||.+||..=.--+.-|...+|| .|.-|| T Consensus 89 SCG~~fsdg~KA~~Af~q~~a~-~kA~YP 116 (120) T d1adta2 89 SCGMFFSEGAKAQVAFKQIKAF-MQALYP 116 (120) T ss_dssp CCCCEESSHHHHHHHHHHHHHH-HHHHST T ss_pred CCCEEECCCHHHHHHHHHHHHH-HHHHCC T ss_conf 6132635669999999999999-997574 No 2 >d2b8ua1 a.26.1.2 (A:1-129) Interleukin-4 (IL-4) {Human (Homo sapiens) [TaxId: 9606]} Probab=9.84 E-value=42 Score=15.13 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=14.3 Q ss_pred HHHHHHHHHHHHHHHCCC Q ss_conf 346665555776421185 Q 537021.9.peg.6 13 YKKDFLDNIAYHIKEKYP 30 (40) Q Consensus 13 ykkdfldniayhikekyp 30 (40) --||||+..---.+|||- T Consensus 108 TLkDFLerLK~IMqekYs 125 (129) T d2b8ua1 108 TLENFLERLKTIMREKYS 125 (129) T ss_dssp EHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 599999999999999876 No 3 >d2v7fa1 a.4.5.84 (A:2-150) Ribosomal protein S19e {Pyrococcus abyssi [TaxId: 29292]} Probab=5.42 E-value=1.1e+02 Score=12.98 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=12.3 Q ss_pred HHHHHHHHHHHHHHHHHC Q ss_conf 023466655557764211 Q 537021.9.peg.6 11 TVYKKDFLDNIAYHIKEK 28 (40) Q Consensus 11 tvykkdfldniayhikek 28 (40) |---..+||+||..|.++ T Consensus 121 T~~G~~~LD~iA~~v~~~ 138 (149) T d2v7fa1 121 TPKGRSFLDKIATELKKE 138 (149) T ss_dssp CHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHH T ss_conf 888999999999999999 No 4 >d1g8ka1 b.52.2.2 (A:683-825) Arsenite oxidase large subunit {Alcaligenes faecalis [TaxId: 511]} Probab=3.97 E-value=1.4e+02 Score=12.53 Aligned_cols=11 Identities=45% Similarity=0.610 Sum_probs=6.3 Q ss_pred HHHCCCEEEEE Q ss_conf 42118568866 Q 537021.9.peg.6 25 IKEKYPFVLGI 35 (40) Q Consensus 25 ikekypfvlgi 35 (40) .+++|||+|-- T Consensus 8 ~~~~yPf~L~T 18 (143) T d1g8ka1 8 QKDKYRFWLNN 18 (143) T ss_dssp HHHHCSEEEEE T ss_pred CCCCCCEEEEC T ss_conf 36889999987 No 5 >d2oq0a1 b.40.16.1 (A:115-202) Gamma-interferon-inducible protein Ifi-16 {Human (Homo sapiens) [TaxId: 9606]} Probab=3.95 E-value=85 Score=13.58 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=19.5 Q ss_pred CEEEEEECCHHHHHHH-HHHHHHHHHHCC Q ss_conf 1035630200234666-555577642118 Q 537021.9.peg.6 2 SCAFFFGGFTVYKKDF-LDNIAYHIKEKY 29 (40) Q Consensus 2 scafffggftvykkdf-ldniayhikeky 29 (40) +-.|+.|-|+|+||.- -++|-|.|+.+- T Consensus 11 ~Gt~V~GvF~v~KK~~~~~~~~YeI~D~T 39 (88) T d2oq0a1 11 SGNIVYGVFMLHKKTVNQKTTIYEIQDDR 39 (88) T ss_dssp TTCEEEEEEEEEEEEECSSEEEEEEEETT T ss_pred CCCEEEEEEEEEEEEECCCEEEEEEECCC T ss_conf 76499689999999885774999986488 No 6 >d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Probab=3.65 E-value=73 Score=13.90 Aligned_cols=17 Identities=35% Similarity=0.598 Sum_probs=12.7 Q ss_pred HHHHHHCCCEEEEEECC Q ss_conf 77642118568866224 Q 537021.9.peg.6 22 AYHIKEKYPFVLGIEKS 38 (40) Q Consensus 22 ayhikekypfvlgieks 38 (40) .|..+.++||++|.|-+ T Consensus 48 ~~~~~~~~P~v~G~E~~ 64 (131) T d1iz0a1 48 AYLTRLHPPFIPGMEVV 64 (131) T ss_dssp CSSSCCCSSBCCCCEEE T ss_pred CCCCCCCCEEEEEEEEE T ss_conf 44433223067521027 No 7 >d1k8kd2 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]} Probab=3.53 E-value=1.7e+02 Score=12.05 Aligned_cols=12 Identities=50% Similarity=0.780 Sum_probs=8.3 Q ss_pred HHHHHHHHHHHH Q ss_conf 665555776421 Q 537021.9.peg.6 16 DFLDNIAYHIKE 27 (40) Q Consensus 16 dfldniayhike 27 (40) .|-+-+.||||- T Consensus 126 ~FR~YlhYHIKc 137 (164) T d1k8kd2 126 TFRDYLHYHIKC 137 (164) T ss_dssp THHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999998872 No 8 >d2a9sa1 c.51.5.1 (A:1-167) Competence/damage-inducible protein CinA {Agrobacterium tumefaciens [TaxId: 358]} Probab=3.49 E-value=1e+02 Score=13.14 Aligned_cols=12 Identities=42% Similarity=0.578 Sum_probs=0.0 Q ss_pred CEEEEEECCHHH Q ss_conf 103563020023 Q 537021.9.peg.6 2 SCAFFFGGFTVY 13 (40) Q Consensus 2 scafffggftvy 13 (40) +..+|.||+.+| T Consensus 47 aS~~f~gg~V~Y 58 (167) T d2a9sa1 47 SSAVVDRGFVTY 58 (167) T ss_dssp GGGTEEEEEEEC T ss_pred CHHHHCCEECCH T ss_conf 033524701240 No 9 >d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Probab=2.75 E-value=1.8e+02 Score=11.99 Aligned_cols=11 Identities=45% Similarity=0.604 Sum_probs=0.0 Q ss_pred HHCCCEEEEEE Q ss_conf 21185688662 Q 537021.9.peg.6 26 KEKYPFVLGIE 36 (40) Q Consensus 26 kekypfvlgie 36 (40) ..++|+|+|.| T Consensus 59 ~~~~P~v~GhE 69 (177) T d1jvba1 59 GVKLPVTLGHE 69 (177) T ss_dssp CCCSCEECCCE T ss_pred CCCCCCCCCCE T ss_conf 56888040115 No 10 >d1tmoa1 b.52.2.2 (A:632-798) Trimethylamine N-oxide reductase {Shewanella massilia [TaxId: 76854]} Probab=2.68 E-value=2.1e+02 Score=11.56 Aligned_cols=7 Identities=43% Similarity=0.653 Sum_probs=0.0 Q ss_pred HCCCEEE Q ss_conf 1185688 Q 537021.9.peg.6 27 EKYPFVL 33 (40) Q Consensus 27 ekypfvl 33 (40) ++|||.| T Consensus 10 ~~yPl~l 16 (167) T d1tmoa1 10 DKHPIWL 16 (167) T ss_dssp TTCCEEE T ss_pred CCCCEEE T ss_conf 7889798 Done!