Query         537021.9.peg.658_1
Match_columns 40
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Tue May 24 23:00:12 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_658.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1adta2 g.51.1.1 (A:266-385) F  14.3      41   0.003   15.1   1.9   28    2-30     89-116 (120)
  2 d2b8ua1 a.26.1.2 (A:1-129) Int   9.8      42   0.003   15.1   0.8   18   13-30    108-125 (129)
  3 d2v7fa1 a.4.5.84 (A:2-150) Rib   5.4 1.1E+02  0.0081   13.0   1.3   18   11-28    121-138 (149)
  4 d1g8ka1 b.52.2.2 (A:683-825) A   4.0 1.4E+02    0.01   12.5   0.9   11   25-35      8-18  (143)
  5 d2oq0a1 b.40.16.1 (A:115-202)    4.0      85  0.0062   13.6  -0.2   28    2-29     11-39  (88)
  6 d1iz0a1 b.35.1.2 (A:1-98,A:270   3.7      73  0.0053   13.9  -0.8   17   22-38     48-64  (131)
  7 d1k8kd2 d.198.2.1 (D:121-284)    3.5 1.7E+02   0.012   12.1   1.1   12   16-27    126-137 (164)
  8 d2a9sa1 c.51.5.1 (A:1-167) Com   3.5   1E+02  0.0076   13.1  -0.1   12    2-13     47-58  (167)
  9 d1jvba1 b.35.1.2 (A:1-143,A:31   2.7 1.8E+02   0.013   12.0   0.4   11   26-36     59-69  (177)
 10 d1tmoa1 b.52.2.2 (A:632-798) T   2.7 2.1E+02   0.016   11.6   1.0    7   27-33     10-16  (167)

No 1  
>d1adta2 g.51.1.1 (A:266-385) First Zn-domain of early E2A DNA-binding protein, ADDBP {Human adenovirus type 5 [TaxId: 28285]}
Probab=14.32  E-value=41  Score=15.15  Aligned_cols=28  Identities=29%  Similarity=0.549  Sum_probs=21.6

Q ss_pred             CEEEEEECCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             10356302002346665555776421185
Q 537021.9.peg.6    2 SCAFFFGGFTVYKKDFLDNIAYHIKEKYP   30 (40)
Q Consensus         2 scafffggftvykkdfldniayhikekyp   30 (40)
                      ||.+||..=.--+.-|...+|| .|.-||
T Consensus        89 SCG~~fsdg~KA~~Af~q~~a~-~kA~YP  116 (120)
T d1adta2          89 SCGMFFSEGAKAQVAFKQIKAF-MQALYP  116 (120)
T ss_dssp             CCCCEESSHHHHHHHHHHHHHH-HHHHST
T ss_pred             CCCEEECCCHHHHHHHHHHHHH-HHHHCC
T ss_conf             6132635669999999999999-997574


No 2  
>d2b8ua1 a.26.1.2 (A:1-129) Interleukin-4 (IL-4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.84  E-value=42  Score=15.13  Aligned_cols=18  Identities=28%  Similarity=0.591  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHCCC
Q ss_conf             346665555776421185
Q 537021.9.peg.6   13 YKKDFLDNIAYHIKEKYP   30 (40)
Q Consensus        13 ykkdfldniayhikekyp   30 (40)
                      --||||+..---.+|||-
T Consensus       108 TLkDFLerLK~IMqekYs  125 (129)
T d2b8ua1         108 TLENFLERLKTIMREKYS  125 (129)
T ss_dssp             EHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             599999999999999876


No 3  
>d2v7fa1 a.4.5.84 (A:2-150) Ribosomal protein S19e {Pyrococcus abyssi [TaxId: 29292]}
Probab=5.42  E-value=1.1e+02  Score=12.98  Aligned_cols=18  Identities=39%  Similarity=0.565  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHC
Q ss_conf             023466655557764211
Q 537021.9.peg.6   11 TVYKKDFLDNIAYHIKEK   28 (40)
Q Consensus        11 tvykkdfldniayhikek   28 (40)
                      |---..+||+||..|.++
T Consensus       121 T~~G~~~LD~iA~~v~~~  138 (149)
T d2v7fa1         121 TPKGRSFLDKIATELKKE  138 (149)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
T ss_conf             888999999999999999


No 4  
>d1g8ka1 b.52.2.2 (A:683-825) Arsenite oxidase large subunit {Alcaligenes faecalis [TaxId: 511]}
Probab=3.97  E-value=1.4e+02  Score=12.53  Aligned_cols=11  Identities=45%  Similarity=0.610  Sum_probs=6.3

Q ss_pred             HHHCCCEEEEE
Q ss_conf             42118568866
Q 537021.9.peg.6   25 IKEKYPFVLGI   35 (40)
Q Consensus        25 ikekypfvlgi   35 (40)
                      .+++|||+|--
T Consensus         8 ~~~~yPf~L~T   18 (143)
T d1g8ka1           8 QKDKYRFWLNN   18 (143)
T ss_dssp             HHHHCSEEEEE
T ss_pred             CCCCCCEEEEC
T ss_conf             36889999987


No 5  
>d2oq0a1 b.40.16.1 (A:115-202) Gamma-interferon-inducible protein Ifi-16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.95  E-value=85  Score=13.58  Aligned_cols=28  Identities=25%  Similarity=0.418  Sum_probs=19.5

Q ss_pred             CEEEEEECCHHHHHHH-HHHHHHHHHHCC
Q ss_conf             1035630200234666-555577642118
Q 537021.9.peg.6    2 SCAFFFGGFTVYKKDF-LDNIAYHIKEKY   29 (40)
Q Consensus         2 scafffggftvykkdf-ldniayhikeky   29 (40)
                      +-.|+.|-|+|+||.- -++|-|.|+.+-
T Consensus        11 ~Gt~V~GvF~v~KK~~~~~~~~YeI~D~T   39 (88)
T d2oq0a1          11 SGNIVYGVFMLHKKTVNQKTTIYEIQDDR   39 (88)
T ss_dssp             TTCEEEEEEEEEEEEECSSEEEEEEEETT
T ss_pred             CCCEEEEEEEEEEEEECCCEEEEEEECCC
T ss_conf             76499689999999885774999986488


No 6  
>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}
Probab=3.65  E-value=73  Score=13.90  Aligned_cols=17  Identities=35%  Similarity=0.598  Sum_probs=12.7

Q ss_pred             HHHHHHCCCEEEEEECC
Q ss_conf             77642118568866224
Q 537021.9.peg.6   22 AYHIKEKYPFVLGIEKS   38 (40)
Q Consensus        22 ayhikekypfvlgieks   38 (40)
                      .|..+.++||++|.|-+
T Consensus        48 ~~~~~~~~P~v~G~E~~   64 (131)
T d1iz0a1          48 AYLTRLHPPFIPGMEVV   64 (131)
T ss_dssp             CSSSCCCSSBCCCCEEE
T ss_pred             CCCCCCCCEEEEEEEEE
T ss_conf             44433223067521027


No 7  
>d1k8kd2 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.53  E-value=1.7e+02  Score=12.05  Aligned_cols=12  Identities=50%  Similarity=0.780  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             665555776421
Q 537021.9.peg.6   16 DFLDNIAYHIKE   27 (40)
Q Consensus        16 dfldniayhike   27 (40)
                      .|-+-+.||||-
T Consensus       126 ~FR~YlhYHIKc  137 (164)
T d1k8kd2         126 TFRDYLHYHIKC  137 (164)
T ss_dssp             THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999998872


No 8  
>d2a9sa1 c.51.5.1 (A:1-167) Competence/damage-inducible protein CinA {Agrobacterium tumefaciens [TaxId: 358]}
Probab=3.49  E-value=1e+02  Score=13.14  Aligned_cols=12  Identities=42%  Similarity=0.578  Sum_probs=0.0

Q ss_pred             CEEEEEECCHHH
Q ss_conf             103563020023
Q 537021.9.peg.6    2 SCAFFFGGFTVY   13 (40)
Q Consensus         2 scafffggftvy   13 (40)
                      +..+|.||+.+|
T Consensus        47 aS~~f~gg~V~Y   58 (167)
T d2a9sa1          47 SSAVVDRGFVTY   58 (167)
T ss_dssp             GGGTEEEEEEEC
T ss_pred             CHHHHCCEECCH
T ss_conf             033524701240


No 9  
>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=2.75  E-value=1.8e+02  Score=11.99  Aligned_cols=11  Identities=45%  Similarity=0.604  Sum_probs=0.0

Q ss_pred             HHCCCEEEEEE
Q ss_conf             21185688662
Q 537021.9.peg.6   26 KEKYPFVLGIE   36 (40)
Q Consensus        26 kekypfvlgie   36 (40)
                      ..++|+|+|.|
T Consensus        59 ~~~~P~v~GhE   69 (177)
T d1jvba1          59 GVKLPVTLGHE   69 (177)
T ss_dssp             CCCSCEECCCE
T ss_pred             CCCCCCCCCCE
T ss_conf             56888040115


No 10 
>d1tmoa1 b.52.2.2 (A:632-798) Trimethylamine N-oxide reductase {Shewanella massilia [TaxId: 76854]}
Probab=2.68  E-value=2.1e+02  Score=11.56  Aligned_cols=7  Identities=43%  Similarity=0.653  Sum_probs=0.0

Q ss_pred             HCCCEEE
Q ss_conf             1185688
Q 537021.9.peg.6   27 EKYPFVL   33 (40)
Q Consensus        27 ekypfvl   33 (40)
                      ++|||.|
T Consensus        10 ~~yPl~l   16 (167)
T d1tmoa1          10 DKHPIWL   16 (167)
T ss_dssp             TTCCEEE
T ss_pred             CCCCEEE
T ss_conf             7889798


Done!