RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.658_1
         (40 letters)



>gnl|CDD|131185 TIGR02130, dapB_plant, dihydrodipicolinate reductase.  This narrow
           family includes genes from Arabidopsis and Fibrobacter
           succinogenes (which probably recieved the gene from a
           plant via lateral gene transfer). The sequences are
           distantly related to the dihydrodipicolinate reductases
           from archaea. In Fibrobacter this gene is the only
           candidate DHPR in the genome.
          Length = 275

 Score = 24.9 bits (54), Expect = 5.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 19  DNIAYHIKEKYPFVLGIEKSD 39
           DN A++ K   PFV+G    D
Sbjct: 84  DNAAFYGKHGIPFVMGTTGGD 104


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.328    0.146    0.455 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 680,156
Number of extensions: 23206
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 5
Length of query: 40
Length of database: 5,994,473
Length adjustment: 14
Effective length of query: 26
Effective length of database: 5,691,961
Effective search space: 147990986
Effective search space used: 147990986
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.4 bits)