RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.658_1
         (40 letters)



>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis,
          nucleotide binding binding, cytoplasm,
          nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium
          tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A*
          2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A*
          2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A*
          Length = 312

 Score = 24.2 bits (52), Expect = 8.1
 Identities = 5/22 (22%), Positives = 10/22 (45%)

Query: 14 KKDFLDNIAYHIKEKYPFVLGI 35
            +FL     +     PF++G+
Sbjct: 74 TAEFLGEPQQNPDRPVPFIIGV 95


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.328    0.146    0.455 

Gapped
Lambda     K      H
   0.267   0.0545    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 378,191
Number of extensions: 9573
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 40
Length of database: 5,693,230
Length adjustment: 14
Effective length of query: 26
Effective length of database: 5,353,814
Effective search space: 139199164
Effective search space used: 139199164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.5 bits)