Query 537021.9.peg.671_1
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Tue May 24 22:42:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_671.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >8tfv_A Protein (thanatin); ba 28.8 20 0.00058 18.3 0.8 18 6-23 1-18 (26)
2 >3ide_A PP, capsid protein VP2 21.1 57 0.0017 16.0 2.0 25 4-28 84-108 (296)
3 >2df7_A Structural polyprotein 18.8 69 0.002 15.6 2.0 25 4-28 87-111 (315)
4 >2rdo_7 EF-G, elongation facto 18.4 56 0.0017 16.1 1.4 23 8-30 15-37 (94)
5 >2oaj_A Protein SNI1; WD40 rep 12.4 61 0.0018 15.9 0.4 23 5-27 33-55 (122)
6 >1ok8_A Major envelope protein 10.9 98 0.0029 14.9 1.0 14 19-32 101-114 (139)
7 >1dar_A EF-G, elongation facto 8.2 1.8E+02 0.0052 13.6 1.5 23 9-31 38-60 (135)
8 >2wh0_Q Pkcev3, protein kinase 7.6 1.1E+02 0.0033 14.6 0.2 13 7-19 2-14 (31)
9 >1n0u_A EF-2, elongation facto 6.4 2.3E+02 0.0067 13.0 1.3 19 11-29 41-59 (128)
10 >1d6g_A CCK-A-receptor, cholec 6.1 2.1E+02 0.0063 13.2 1.0 13 25-37 26-38 (47)
No 1
>>8tfv_A Protein (thanatin); bactericidal, fungicidal; NMR {Synthetic} (A:)
Probab=28.79 E-value=20 Score=18.33 Aligned_cols=18 Identities=44% Similarity=0.851 Sum_probs=14.0
Q ss_pred CCCCCCCEEEEEEEEECC
Q ss_conf 432258501455542010
Q 537021.9.peg.6 6 GQQKSAPISYCRLITGEI 23 (38)
Q Consensus 6 gqqksapisycrlitgei 23 (38)
|..|..||-||.--||.-
T Consensus 1 gskkpvpiiycnrrtgkc 18 (26)
T 8tfv_A 1 GSKKPVPIIYCNRRTGKC 18 (26)
T ss_dssp CCCCCCCCEEEEGGGTEE
T ss_pred CCCCCCCEEEECCCCCCE
T ss_conf 998864689975767610
No 2
>>3ide_A PP, capsid protein VP2; jelly roll, beta sandwich, icosahedral particle, virion, virus like particle; 3.35A {Infectious pancreatic necrosis virus -sp} (A:1-198,A:345-442)
Probab=21.11 E-value=57 Score=16.02 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=20.2
Q ss_pred CCCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 1243225850145554201000026
Q 537021.9.peg.6 4 YAGQQKSAPISYCRLITGEISARSG 28 (38)
Q Consensus 4 yagqqksapisycrlitgeisarsg 28 (38)
|..|.-.+-..||||+.+-+.-||-
T Consensus 84 ~TaQ~L~~syNY~RlvS~~~~irSS 108 (296)
T 3ide_A 84 ETSQDLKKAFNYGRLISRKYDIQSS 108 (296)
T ss_dssp ECSSCGGGTEEEEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHCHHHHCCEEEEEEEC
T ss_conf 3565556662601100316888713
No 3
>>2df7_A Structural polyprotein VP2; icosahedral capsid, immunogen, epitope, calcium, surface loop,, virus like particle; 2.60A {Infectious bursal disease virus} (A:1-200,A:344-458)
Probab=18.82 E-value=69 Score=15.62 Aligned_cols=25 Identities=32% Similarity=0.658 Sum_probs=20.4
Q ss_pred CCCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 1243225850145554201000026
Q 537021.9.peg.6 4 YAGQQKSAPISYCRLITGEISARSG 28 (38)
Q Consensus 4 yagqqksapisycrlitgeisarsg 28 (38)
|..|.-..-..|||||.+-+.-||.
T Consensus 87 ~taQ~L~~~yNYgRlvS~~~~irSS 111 (315)
T 2df7_A 87 LTAQNLPASYNYCRLVSRSLTVRSS 111 (315)
T ss_dssp ECSSCGGGTEEEEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHCHHHHHCEEEEEEEC
T ss_conf 6667667663333310024665513
No 4
>>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} (7:314-407)
Probab=18.35 E-value=56 Score=16.06 Aligned_cols=23 Identities=9% Similarity=0.281 Sum_probs=17.7
Q ss_pred CCCCCEEEEEEEEECCCCCCCCC
Q ss_conf 22585014555420100002667
Q 537021.9.peg.6 8 QKSAPISYCRLITGEISARSGIN 30 (38)
Q Consensus 8 qksapisycrlitgeisarsgin 30 (38)
+....++|+|+..|++..+.-+.
T Consensus 15 ~~~G~i~~~Rv~sG~l~~g~~v~ 37 (94)
T 2rdo_7 15 PFVGNLTFFRVYSGVVNSGDTVL 37 (94)
T ss_pred CCCCEEEEEEEECCEECCCCEEE
T ss_conf 99973999999655526989998
No 5
>>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} (A:1-17,A:743-847)
Probab=12.42 E-value=61 Score=15.87 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=18.4
Q ss_pred CCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 24322585014555420100002
Q 537021.9.peg.6 5 AGQQKSAPISYCRLITGEISARS 27 (38)
Q Consensus 5 agqqksapisycrlitgeisars 27 (38)
-|++|++++--|-++.|||---|
T Consensus 33 k~e~k~~tVlv~L~iNgeIKils 55 (122)
T 2oaj_A 33 NNDRKNLTVIITLEINGHLRVFT 55 (122)
T ss_dssp SSCEEEEEEEEEEETTSEEEEEE
T ss_pred CCCCCCCEEEEEEECCCEEEEEE
T ss_conf 27777856999997998099998
No 6
>>1ok8_A Major envelope protein E; virus/viral protein, membrane fusion, flavivirus, fusion peptide, low-PH conformational change, trimer; HET: NAG; 2.0A {Dengue virus type 2} (A:1-52,A:133-192,A:271-297)
Probab=10.92 E-value=98 Score=14.86 Aligned_cols=14 Identities=43% Similarity=0.600 Sum_probs=11.0
Q ss_pred EEECCCCCCCCCCC
Q ss_conf 42010000266788
Q 537021.9.peg.6 19 ITGEISARSGINQP 32 (38)
Q Consensus 19 itgeisarsginqp 32 (38)
+|=|.+.||||+|-
T Consensus 101 VtldCEPRSGLD~~ 114 (139)
T 1ok8_A 101 VTMECSPRTGLDQM 114 (139)
T ss_dssp EEEEEEECSCCCCB
T ss_pred EEEEEEECCCCCEE
T ss_conf 99999743162787
No 7
>>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus HB8} (A:284-418)
Probab=8.23 E-value=1.8e+02 Score=13.57 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=17.0
Q ss_pred CCCCEEEEEEEEECCCCCCCCCC
Q ss_conf 25850145554201000026678
Q 537021.9.peg.6 9 KSAPISYCRLITGEISARSGINQ 31 (38)
Q Consensus 9 ksapisycrlitgeisarsginq 31 (38)
....|+|+|+..|.+..++-+..
T Consensus 38 ~~g~ia~~RV~sG~l~~g~~v~~ 60 (135)
T 1dar_A 38 YVGRLTFIRVYSGTLTSGSYVYN 60 (135)
T ss_dssp TTEEEEEEEEEESEEESSCEEEE
T ss_pred CCCEEEEEEEECCEECCCCEEEE
T ss_conf 99869899950770767999995
No 8
>>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens} (Q:)
Probab=7.57 E-value=1.1e+02 Score=14.60 Aligned_cols=13 Identities=46% Similarity=0.577 Sum_probs=9.7
Q ss_pred CCCCCCEEEEEEE
Q ss_conf 3225850145554
Q 537021.9.peg.6 7 QQKSAPISYCRLI 19 (38)
Q Consensus 7 qqksapisycrli 19 (38)
..||||.|-|.--
T Consensus 2 r~ksaptspcdq~ 14 (31)
T 2wh0_Q 2 RSKSAPTSPCDQE 14 (31)
T ss_pred CCCCCCCCCHHHH
T ss_conf 6545899933789
No 9
>>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} (A:353-480)
Probab=6.38 E-value=2.3e+02 Score=13.05 Aligned_cols=19 Identities=11% Similarity=0.338 Sum_probs=14.1
Q ss_pred CCEEEEEEEEECCCCCCCC
Q ss_conf 8501455542010000266
Q 537021.9.peg.6 11 APISYCRLITGEISARSGI 29 (38)
Q Consensus 11 apisycrlitgeisarsgi 29 (38)
.-|+|||...|.+....-+
T Consensus 41 ~~i~~~RI~sG~l~~g~~v 59 (128)
T 1n0u_A 41 RFYAFGRVFAGTVKSGQKV 59 (128)
T ss_dssp CEEEEEEEEESEEETTCEE
T ss_pred CEEEEEEEECCEECCCCEE
T ss_conf 5467988542256179989
No 10
>>1d6g_A CCK-A-receptor, cholecystokinin type A receptor; alpha-helix, beta-sheet, complex GPCR-ligand; NMR {Synthetic} (A:)
Probab=6.14 E-value=2.1e+02 Score=13.18 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 0026678886567
Q 537021.9.peg.6 25 ARSGINQPLPSKN 37 (38)
Q Consensus 25 arsginqplpskn 37 (38)
.-.-.+||-|||.
T Consensus 26 T~~Cld~P~psKe 38 (47)
T 1d6g_A 26 TLFCLDQPRPSKE 38 (47)
T ss_dssp CCBSCCCCSSCSS
T ss_pred EEEECCCCCCCHH
T ss_conf 3787279998267
Done!