Query 537021.9.peg.671_1
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 24 23:21:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_671.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 8tfv_A Protein (thanatin); bac 28.5 14 0.00059 18.3 0.8 17 6-22 1-17 (26)
2 3ide_A PP, capsid protein VP2; 14.8 69 0.0029 14.8 2.0 25 4-28 84-108 (442)
3 2df7_A Structural polyprotein 11.8 96 0.0041 14.1 2.0 25 4-28 87-111 (458)
4 2wh0_Q Pkcev3, protein kinase 7.9 74 0.0031 14.7 0.2 13 7-19 2-14 (31)
5 3mgj_A Uncharacterized protein 6.3 1.7E+02 0.0073 12.9 1.7 15 5-20 39-53 (118)
6 1dl0_A J-atracotoxin-HV1C; neu 5.9 1.6E+02 0.0068 13.0 1.1 11 8-18 24-34 (37)
7 1d6g_A CCK-A-receptor, cholecy 5.2 1.9E+02 0.0078 12.7 1.0 13 25-37 26-38 (47)
8 2k2b_A Degenerin MEC-4; membra 4.3 87 0.0037 14.3 -1.2 12 16-27 62-73 (111)
9 3l4q_A NS1, NS1A, non-structur 3.9 2.1E+02 0.0088 12.5 0.5 10 19-35 90-99 (164)
10 3eu6_A NS1, nonstructural prot 3.8 2.2E+02 0.0091 12.4 0.6 10 19-35 151-160 (215)
No 1
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=28.55 E-value=14 Score=18.30 Aligned_cols=17 Identities=47% Similarity=0.923 Sum_probs=13.5
Q ss_pred CCCCCCCEEEEEEEEEC
Q ss_conf 43225850145554201
Q 537021.9.peg.6 6 GQQKSAPISYCRLITGE 22 (38)
Q Consensus 6 gqqksapisycrlitge 22 (38)
|..|..||-||.--||.
T Consensus 1 gskkpvpiiycnrrtgk 17 (26)
T 8tfv_A 1 GSKKPVPIIYCNRRTGK 17 (26)
T ss_dssp CCCCCCCCEEEEGGGTE
T ss_pred CCCCCCCEEEECCCCCC
T ss_conf 99886468997576761
No 2
>3ide_A PP, capsid protein VP2; jelly roll, beta sandwich, icosahedral particle, virion, virus like particle; 3.35A {Infectious pancreatic necrosis virus -sp}
Probab=14.82 E-value=69 Score=14.84 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=19.3
Q ss_pred CCCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 1243225850145554201000026
Q 537021.9.peg.6 4 YAGQQKSAPISYCRLITGEISARSG 28 (38)
Q Consensus 4 yagqqksapisycrlitgeisarsg 28 (38)
+..|.-.+-..||||+.+-+.-||-
T Consensus 84 ~taQ~L~~~ynYgRlvs~~~~i~SS 108 (442)
T 3ide_A 84 ETSQDLKKAFNYGRLISRKYDIQSS 108 (442)
T ss_dssp ECSSCGGGTEEEEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHCHHHHHCEEEEEEEC
T ss_conf 6666446552612100205888703
No 3
>2df7_A Structural polyprotein VP2; icosahedral capsid, immunogen, epitope, calcium, surface loop,, virus like particle; 2.60A {Infectious bursal disease virus} SCOP: b.121.4.9 PDB: 2gsy_A 3fbm_A 1wcd_J 1wce_A
Probab=11.76 E-value=96 Score=14.13 Aligned_cols=25 Identities=32% Similarity=0.658 Sum_probs=19.2
Q ss_pred CCCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 1243225850145554201000026
Q 537021.9.peg.6 4 YAGQQKSAPISYCRLITGEISARSG 28 (38)
Q Consensus 4 yagqqksapisycrlitgeisarsg 28 (38)
+..|.-..-..|||||.+.+.-||-
T Consensus 87 ~TaQdL~~~yNYgRlvS~~~~i~SS 111 (458)
T 2df7_A 87 LTAQNLPASYNYCRLVSRSLTVRSS 111 (458)
T ss_dssp ECSSCGGGTEEEEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHCHHHHHHEEEEEEEC
T ss_conf 7777667652523211025777613
No 4
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=7.87 E-value=74 Score=14.71 Aligned_cols=13 Identities=46% Similarity=0.577 Sum_probs=9.7
Q ss_pred CCCCCCEEEEEEE
Q ss_conf 3225850145554
Q 537021.9.peg.6 7 QQKSAPISYCRLI 19 (38)
Q Consensus 7 qqksapisycrli 19 (38)
.-||||.|-|.--
T Consensus 2 r~ksaptspcdq~ 14 (31)
T 2wh0_Q 2 RSKSAPTSPCDQE 14 (31)
T ss_pred CCCCCCCCCHHHH
T ss_conf 6545899933789
No 5
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=6.30 E-value=1.7e+02 Score=12.86 Aligned_cols=15 Identities=33% Similarity=0.879 Sum_probs=10.7
Q ss_pred CCCCCCCCEEEEEEEE
Q ss_conf 2432258501455542
Q 537021.9.peg.6 5 AGQQKSAPISYCRLIT 20 (38)
Q Consensus 5 agqqksapisycrlit 20 (38)
.|++|..+ |||||.-
T Consensus 39 vGk~k~d~-SyA~l~V 53 (118)
T 3mgj_A 39 IGKRKTDP-SYAKILV 53 (118)
T ss_dssp CCSSTTSC-EEEEEEE
T ss_pred CCCCCCCC-CEEEEEE
T ss_conf 58778886-4589999
No 6
>1dl0_A J-atracotoxin-HV1C; neurotoxin, insecticidal, cystine knot, vicinal disulfide; NMR {Synthetic} SCOP: g.3.6.2
Probab=5.93 E-value=1.6e+02 Score=13.01 Aligned_cols=11 Identities=45% Similarity=0.863 Sum_probs=7.9
Q ss_pred CCCCCEEEEEE
Q ss_conf 22585014555
Q 537021.9.peg.6 8 QKSAPISYCRL 18 (38)
Q Consensus 8 qksapisycrl 18 (38)
..|.-+||||-
T Consensus 24 aesngvsycrk 34 (37)
T 1dl0_A 24 AESNGVSYCRK 34 (37)
T ss_dssp ECTTSCEEEEE
T ss_pred CCCCCCCEECC
T ss_conf 13487412515
No 7
>1d6g_A CCK-A-receptor, cholecystokinin type A receptor; alpha-helix, beta-sheet, complex GPCR-ligand, hormone/growth factor complex; NMR {Synthetic} SCOP: g.33.1.1
Probab=5.19 E-value=1.9e+02 Score=12.72 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 0026678886567
Q 537021.9.peg.6 25 ARSGINQPLPSKN 37 (38)
Q Consensus 25 arsginqplpskn 37 (38)
.-.-.+||-|||.
T Consensus 26 T~~Cld~P~psKe 38 (47)
T 1d6g_A 26 TLFCLDQPRPSKE 38 (47)
T ss_dssp CCBSCCCCSSCSS
T ss_pred EEEECCCCCCCHH
T ss_conf 3787279998267
No 8
>2k2b_A Degenerin MEC-4; membrane associated, minimal constraint, detergent solubilized, glycoprotein, ION transport, ionic channel; NMR {Caenorhabditis elegans}
Probab=4.26 E-value=87 Score=14.34 Aligned_cols=12 Identities=50% Similarity=0.971 Sum_probs=0.0
Q ss_pred EEEEEECCCCCC
Q ss_conf 555420100002
Q 537021.9.peg.6 16 CRLITGEISARS 27 (38)
Q Consensus 16 crlitgeisars 27 (38)
|.|+|+||...+
T Consensus 62 CeL~T~efdpk~ 73 (111)
T 2k2b_A 62 CELITGEFDPKL 73 (111)
T ss_dssp CHHHHSCCSTTS
T ss_pred EEHHHCCCCCCC
T ss_conf 100104468342
No 9
>3l4q_A NS1, NS1A, non-structural protein 1; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Influenza a virus}
Probab=3.92 E-value=2.1e+02 Score=12.46 Aligned_cols=10 Identities=90% Similarity=1.391 Sum_probs=0.0
Q ss_pred EEECCCCCCCCCCCCCC
Q ss_conf 42010000266788865
Q 537021.9.peg.6 19 ITGEISARSGINQPLPS 35 (38)
Q Consensus 19 itgeisarsginqplps 35 (38)
|.|||| ||||
T Consensus 90 ivgeIs-------plps 99 (164)
T 3l4q_A 90 IVGEIS-------PLPS 99 (164)
T ss_dssp EEEEEE-------ECTT
T ss_pred EEEEEC-------CCCC
T ss_conf 687534-------6888
No 10
>3eu6_A NS1, nonstructural protein 1; H5N1, cytoplasm, HOST-virus interaction, interferon antiviral system evasion, nucleus, RNA-binding; 2.70A {Influenza virus} PDB: 3f5t_A
Probab=3.84 E-value=2.2e+02 Score=12.38 Aligned_cols=10 Identities=90% Similarity=1.391 Sum_probs=0.0
Q ss_pred EEECCCCCCCCCCCCCC
Q ss_conf 42010000266788865
Q 537021.9.peg.6 19 ITGEISARSGINQPLPS 35 (38)
Q Consensus 19 itgeisarsginqplps 35 (38)
|.|||| ||||
T Consensus 151 ivgeIs-------plps 160 (215)
T 3eu6_A 151 IVGEIS-------PLPS 160 (215)
T ss_dssp EEEEEE-------ECCC
T ss_pred EEEEEC-------CCCC
T ss_conf 577415-------7888
Done!