BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.671_1
         (38 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.671_1 
          Length = 38

 Score = 78.6 bits (192), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/38 (100%), Positives = 38/38 (100%)

Query: 1  VNRYAGQQKSAPISYCRLITGEISARSGINQPLPSKNK 38
          VNRYAGQQKSAPISYCRLITGEISARSGINQPLPSKNK
Sbjct: 1  VNRYAGQQKSAPISYCRLITGEISARSGINQPLPSKNK 38


>gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 352

 Score = 20.4 bits (41), Expect = 5.2,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 23 ISARSGINQPLPSK 36
          ++ARS +NQ LP K
Sbjct: 25 LNARSDVNQLLPLK 38


>gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 352

 Score = 20.4 bits (41), Expect = 5.2,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 23 ISARSGINQPLPSK 36
          ++ARS +NQ LP K
Sbjct: 25 LNARSDVNQLLPLK 38


>537021.9.peg.74_1 
          Length = 196

 Score = 20.0 bits (40), Expect = 7.5,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 23 ISARSGINQPLPSK 36
          ++ARS +NQ LP K
Sbjct: 25 LNARSDVNQLLPLK 38


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.312    0.129    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,949
Number of Sequences: 1233
Number of extensions: 422
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 38
length of database: 328,796
effective HSP length: 12
effective length of query: 26
effective length of database: 314,000
effective search space:  8164000
effective search space used:  8164000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 31 (16.5 bits)