Query 537021.9.peg.683_1 Match_columns 37 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 07:53:04 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_683.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2e50_A Protein SET; histone c 9.4 1.8E+02 0.0052 14.0 1.9 26 8-33 56-81 (162) 2 >2zd7_A VPS75, vacuolar protei 9.2 1.8E+02 0.0052 14.0 1.8 25 8-32 46-71 (210) 3 >3fs3_A Nucleosome assembly pr 8.8 1.8E+02 0.0054 13.9 1.8 25 9-33 26-50 (151) 4 >2hlg_A Fruit-specific protein 8.5 69 0.002 15.9 -0.5 12 19-30 2-13 (39) 5 >1x48_A Interferon-induced, do 8.1 1.3E+02 0.0037 14.7 0.6 16 19-34 12-27 (88) 6 >2oqb_A Histone-arginine methy 6.8 2.5E+02 0.0073 13.3 1.6 24 13-36 56-82 (117) 7 >1qu6_A Protein kinase PKR; ds 5.7 1.4E+02 0.0042 14.5 -0.1 16 18-33 18-33 (92) 8 >1r1h_A Neprilysin; enkephalin 5.4 2E+02 0.0058 13.8 0.5 22 15-36 90-111 (115) 9 >2fml_A MUTT/nudix family prot 5.3 2.1E+02 0.0063 13.6 0.6 11 27-37 6-16 (57) 10 >2bol_A TSP36, small heat shoc 5.0 2.1E+02 0.0063 13.6 0.5 15 20-34 30-44 (159) No 1 >>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} (A:64-225) Probab=9.43 E-value=1.8e+02 Score=14.01 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=20.1 Q ss_pred CCCEEEEEEEEECHHHHCCCCEEEEC Q ss_conf 24037999975005531678726531 Q 537021.9.peg.6 8 AKSFSLIFQFTINEYCRSNRNSITFS 33 (37) Q Consensus 8 aksfslifqftineycrsnrnsitfs 33 (37) ..+|.+.|.|.-|+|-...--+.+|. T Consensus 56 ~~~f~i~F~F~~N~yF~n~~L~K~~~ 81 (162) T 2e50_A 56 KSGYRIDFYFDENPYFENKVLSKEFH 81 (162) T ss_dssp CCCEEEEEEECSCSSBSCSEEEEEEC T ss_pred CCCEEEEEEECCCCCCCCCEEEEEEE T ss_conf 77558999968887546776899999 No 2 >>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3c9d_A 3c9b_A 3dm7_A (A:55-264) Probab=9.19 E-value=1.8e+02 Score=14.00 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=18.0 Q ss_pred CCCEEEEEEEEE-CHHHHCCCCEEEE Q ss_conf 240379999750-0553167872653 Q 537021.9.peg.6 8 AKSFSLIFQFTI-NEYCRSNRNSITF 32 (37) Q Consensus 8 aksfslifqfti-neycrsnrnsitf 32 (37) ..+|.|.|+|.- |+|-....-..+| T Consensus 46 ~~~f~l~F~F~~~NpyF~n~~LtK~~ 71 (210) T 2zd7_A 46 TRDFSITFHFHGIEGDFKEQQVTKVF 71 (210) T ss_dssp TTCEEEEEEECCBTTTBCCEEEEEEE T ss_pred CCCEEEEEEECCCCCCCCCCEEEEEE T ss_conf 88558999868888876677589999 No 3 >>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, chaperone; 2.30A {Plasmodium falciparum 3D7} PDB: 3hfd_A 3gyw_A 3gyv_A (A:131-281) Probab=8.82 E-value=1.8e+02 Score=13.93 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=18.4 Q ss_pred CCEEEEEEEEECHHHHCCCCEEEEC Q ss_conf 4037999975005531678726531 Q 537021.9.peg.6 9 KSFSLIFQFTINEYCRSNRNSITFS 33 (37) Q Consensus 9 ksfslifqftineycrsnrnsitfs 33 (37) .+|.+.|.|.-|+|-+..--.-+|. T Consensus 26 ~~f~i~F~F~~NpyF~N~~L~K~y~ 50 (151) T 3fs3_A 26 EGFILSFYFATNPFFSNSVLTKTYH 50 (151) T ss_dssp -CEEEEEEECSCSSBCCSEEEEEEE T ss_pred CCEEEEEEECCCCCCCCCEEEEEEE T ss_conf 8658999847877766655999999 No 4 >>2hlg_A Fruit-specific protein; beta antiparallel, plant protein; NMR {Lycopersicon esculentum} (A:) Probab=8.54 E-value=69 Score=15.94 Aligned_cols=12 Identities=50% Similarity=0.739 Sum_probs=8.4 Q ss_pred ECHHHHCCCCEE Q ss_conf 005531678726 Q 537021.9.peg.6 19 INEYCRSNRNSI 30 (37) Q Consensus 19 ineycrsnrnsi 30 (37) -|+||.+|..-| T Consensus 2 CN~yCt~NsDC~ 13 (39) T 2hlg_A 2 CNEPCSSNSDCI 13 (39) T ss_dssp CSCBCSSSGGGS T ss_pred CCCCCCCCCCEE T ss_conf 654236777855 No 5 >>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} (A:) Probab=8.07 E-value=1.3e+02 Score=14.71 Aligned_cols=16 Identities=13% Similarity=0.544 Sum_probs=11.7 Q ss_pred ECHHHHCCCCEEEECC Q ss_conf 0055316787265314 Q 537021.9.peg.6 19 INEYCRSNRNSITFSS 34 (37) Q Consensus 19 ineycrsnrnsitfss 34 (37) ++|||..++-.+.|-. T Consensus 12 L~e~~qk~~~~~~y~~ 27 (88) T 1x48_A 12 VNSFAQKKKLSVNYEQ 27 (88) T ss_dssp HHHHHHHTTCCEEEEE T ss_pred HHHHHHHHCCCCCCCC T ss_conf 9999998689987402 No 6 >>2oqb_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, transcriptional regulation, activation domain; 1.69A {Rattus norvegicus} (A:) Probab=6.79 E-value=2.5e+02 Score=13.32 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=18.6 Q ss_pred EEEEEEEC---HHHHCCCCEEEECCCC Q ss_conf 99997500---5531678726531476 Q 537021.9.peg.6 13 LIFQFTIN---EYCRSNRNSITFSSGE 36 (37) Q Consensus 13 lifqftin---eycrsnrnsitfssge 36 (37) -+|++++| |-||-.+.|+-...|. T Consensus 56 cvfkc~v~reTEC~rVgkqSfliTlG~ 82 (117) T 2oqb_A 56 CVFKCSVSRETECSRVGRQSFIITLGC 82 (117) T ss_dssp EEEEEEEETTSEEEEETTTEEEEEETT T ss_pred EEEEEEECCCCCCEEECCEEEEEEECC T ss_conf 999998417841102325269999679 No 7 >>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} (A:1-92) Probab=5.69 E-value=1.4e+02 Score=14.46 Aligned_cols=16 Identities=13% Similarity=0.382 Sum_probs=11.1 Q ss_pred EECHHHHCCCCEEEEC Q ss_conf 5005531678726531 Q 537021.9.peg.6 18 TINEYCRSNRNSITFS 33 (37) Q Consensus 18 tineycrsnrnsitfs 33 (37) .+||||..++....|- T Consensus 18 ~L~e~~q~~~~~~~~~ 33 (92) T 1qu6_A 18 ELNTYRQKQGVVLKYQ 33 (92) T ss_dssp HHHHHHHHHTCCCEEE T ss_pred HHHHHHHHCCCCCEEE T ss_conf 9999998559897299 No 8 >>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease, hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} (A:92-118,A:422-509) Probab=5.44 E-value=2e+02 Score=13.77 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=17.7 Q ss_pred EEEEECHHHHCCCCEEEECCCC Q ss_conf 9975005531678726531476 Q 537021.9.peg.6 15 FQFTINEYCRSNRNSITFSSGE 36 (37) Q Consensus 15 fqftineycrsnrnsitfssge 36 (37) .-.+.|-|.-..+|+|+|..|- T Consensus 90 ~p~~VNAyY~~~~N~IviPAGI 111 (115) T 1r1h_A 90 GAAVVNAFYSSGRNQIVFPAGI 111 (115) T ss_dssp CSSCSCCEEETTTTEEEEEGGG T ss_pred CCCCCCCCCCCCCCCEEEEHHH T ss_conf 7555532015200432200886 No 9 >>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.26A {Enterococcus faecalis} (A:150-206) Probab=5.29 E-value=2.1e+02 Score=13.61 Aligned_cols=11 Identities=27% Similarity=0.456 Sum_probs=7.9 Q ss_pred CCEEEECCCCC Q ss_conf 87265314769 Q 537021.9.peg.6 27 RNSITFSSGEI 37 (37) Q Consensus 27 rnsitfssgei 37 (37) .|.|+.||||+ T Consensus 6 ~n~i~lssg~v 16 (57) T 2fml_A 6 GQHITLSHEDV 16 (57) T ss_dssp TTEEEEEETTE T ss_pred CCHHCCCCCCH T ss_conf 41113432000 No 10 >>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} (A:60-94,A:191-314) Probab=5.03 E-value=2.1e+02 Score=13.62 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=12.3 Q ss_pred CHHHHCCCCEEEECC Q ss_conf 055316787265314 Q 537021.9.peg.6 20 NEYCRSNRNSITFSS 34 (37) Q Consensus 20 neycrsnrnsitfss 34 (37) -||...|-.|||||. T Consensus 30 ~~~~~~nyksitfs~ 44 (159) T 2bol_A 30 LEYTQPNYKAIKLSP 44 (159) T ss_dssp TSSCSCCTTTEEEET T ss_pred CCCCCCCCCCCCCCC T ss_conf 678887665314444 Done!