Query 537021.9.peg.691_1 Match_columns 46 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Tue May 24 23:44:02 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_691.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2axth1 f.23.33.1 (H:2-65) Pho 46.3 6.9 0.0005 18.2 2.8 22 17-38 35-56 (64) 2 d1xlya_ a.232.1.1 (A:) RNA-bin 32.4 6.6 0.00048 18.3 0.9 23 14-36 14-36 (232) 3 d2axti1 f.23.37.1 (I:1-35) Pho 9.9 62 0.0045 13.4 2.1 23 18-40 11-33 (35) 4 d1tdpa_ a.29.8.1 (A:) Carnobac 8.9 46 0.0033 14.0 0.7 22 15-36 50-71 (111) 5 d1vf6a_ a.194.1.1 (A:) Associa 6.9 85 0.0062 12.7 1.5 13 13-25 30-42 (58) 6 d1zkda1 c.66.1.52 (A:2-366) Hy 5.9 98 0.0071 12.4 1.5 21 10-30 51-71 (365) 7 d1d9ca_ a.26.1.3 (A:) Interfer 5.8 98 0.0072 12.4 2.5 26 17-43 44-69 (121) 8 d1dkua2 c.61.1.2 (A:167-315) P 5.4 1E+02 0.0075 12.3 1.1 18 7-24 120-137 (149) 9 d1j5ua_ d.208.1.1 (A:) Hypothe 5.1 56 0.0041 13.6 -0.4 17 14-30 55-71 (127) 10 d1jw3a_ d.208.1.1 (A:) Hypothe 3.2 1E+02 0.0076 12.2 -0.4 13 5-17 115-127 (140) No 1 >d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]} Probab=46.28 E-value=6.9 Score=18.21 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=18.8 Q ss_pred HHHHHHHHHHHHHHCCCCCCCC Q ss_conf 6899999999974415666568 Q 537021.9.peg.6 17 PLFSRFISIYLLIFNSAIPIKN 38 (46) Q Consensus 17 plfsrfisiyllifnsaipikn 38 (46) -||.-|..|.|-|+||.+.+.+ T Consensus 35 ~Lf~vfl~iiLeiYNss~lldg 56 (64) T d2axth1 35 GLFLVFLLIILEIYNSTLILDG 56 (64) T ss_dssp HHHHHHHHHHHHHHTTSSCCTT T ss_pred HHHHHHHHHHHHHHCCCEEECC T ss_conf 9999999999999464215426 No 2 >d1xlya_ a.232.1.1 (A:) RNA-binding protein She2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=32.37 E-value=6.6 Score=18.28 Aligned_cols=23 Identities=35% Similarity=0.597 Sum_probs=18.4 Q ss_pred EECHHHHHHHHHHHHHHCCCCCC Q ss_conf 30168999999999744156665 Q 537021.9.peg.6 14 SISPLFSRFISIYLLIFNSAIPI 36 (46) Q Consensus 14 sisplfsrfisiyllifnsaipi 36 (46) .|.++||++||-|.-+.|.-|.+ T Consensus 14 qi~~~~s~YiS~yv~~LNk~I~~ 36 (232) T d1xlya_ 14 QILALLSRYLSSYIHVLNKFISH 36 (232) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999 No 3 >d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]} Probab=9.87 E-value=62 Score=13.37 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=18.7 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 89999999997441566656887 Q 537021.9.peg.6 18 LFSRFISIYLLIFNSAIPIKNPI 40 (46) Q Consensus 18 lfsrfisiyllifnsaipiknpi 40 (46) ...-|+|++..-|-|.-|-.||- T Consensus 11 vV~fFv~lFiFGFLSnDP~RnP~ 33 (35) T d2axti1 11 VVTFFVLLFVFGFLSGDPARNPK 33 (35) T ss_dssp HHHHHHHHHHHHHHTTCTTCSSC T ss_pred HHHHHHHHHHHHHCCCCCCCCCC T ss_conf 89999999998630589988989 No 4 >d1tdpa_ a.29.8.1 (A:) Carnobacteriocin B2 immunity protein {Carnobacterium piscicola [TaxId: 2751]} Probab=8.89 E-value=46 Score=14.04 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=17.4 Q ss_pred ECHHHHHHHHHHHHHHCCCCCC Q ss_conf 0168999999999744156665 Q 537021.9.peg.6 15 ISPLFSRFISIYLLIFNSAIPI 36 (46) Q Consensus 15 isplfsrfisiyllifnsaipi 36 (46) .-.+.||-||-|.||...+||- T Consensus 50 vvt~LS~~ISkYYL~H~~~iP~ 71 (111) T d1tdpa_ 50 VISLLSRGISSYYLSHKRIIPS 71 (111) T ss_dssp HHHHHHHHHHHTCTTSCCCCCG T ss_pred HHHHHHCCHHHHHHHHCCCCCH T ss_conf 9999831247788774011859 No 5 >d1vf6a_ a.194.1.1 (A:) Associated tight junction protein Pals-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=6.94 E-value=85 Score=12.69 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=8.9 Q ss_pred EEECHHHHHHHHH Q ss_conf 1301689999999 Q 537021.9.peg.6 13 ISISPLFSRFISI 25 (46) Q Consensus 13 isisplfsrfisi 25 (46) .--||||+...+. T Consensus 30 ~LqSPLF~qiL~l 42 (58) T d1vf6a_ 30 TLKSPLFNQILTL 42 (58) T ss_dssp HHHCHHHHHHHHH T ss_pred HHHCHHHHHHHHH T ss_conf 9868789999999 No 6 >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} Probab=5.88 E-value=98 Score=12.38 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=16.0 Q ss_pred EECEEECHHHHHHHHHHHHHH Q ss_conf 312130168999999999744 Q 537021.9.peg.6 10 YHNISISPLFSRFISIYLLIF 30 (46) Q Consensus 10 yhnisisplfsrfisiyllif 30 (46) |..-++||+|...|+.+++-. T Consensus 51 ~Tsp~is~~Fg~~ia~~~~~~ 71 (365) T d1zkda1 51 TTSPEISQMFGELLGLWSASV 71 (365) T ss_dssp CSHHHHCHHHHHHHHHHHHHH T ss_pred ECCCCHHHHHHHHHHHHHHHH T ss_conf 788734799999999999999 No 7 >d1d9ca_ a.26.1.3 (A:) Interferon-gamma {Cow (Bos taurus) [TaxId: 9913]} Probab=5.83 E-value=98 Score=12.36 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=16.7 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHH Q ss_conf 689999999997441566656887200 Q 537021.9.peg.6 17 PLFSRFISIYLLIFNSAIPIKNPIPQS 43 (46) Q Consensus 17 plfsrfisiyllifnsaipiknpipqs 43 (46) -+.|+.+|+|+-+|. +.+---++..| T Consensus 44 IilSqIvs~Y~kife-nl~~~~~~~~s 69 (121) T d1d9ca_ 44 IIQSQIVSFYFKLFE-NLKDNQVIQRS 69 (121) T ss_dssp HHHHHHHHHHHHHHH-TTTTCTTTHHH T ss_pred HHHHHHHHHHHHHHH-HCCCCCHHHHH T ss_conf 999999999999998-17566015756 No 8 >d1dkua2 c.61.1.2 (A:167-315) Phosphoribosylpyrophosphate synthetase {Bacillus subtilis [TaxId: 1423]} Probab=5.38 E-value=1e+02 Score=12.26 Aligned_cols=18 Identities=28% Similarity=0.674 Sum_probs=13.4 Q ss_pred EEEEECEEECHHHHHHHH Q ss_conf 633312130168999999 Q 537021.9.peg.6 7 VETYHNISISPLFSRFIS 24 (46) Q Consensus 7 vetyhnisisplfsrfis 24 (46) .+.++-+|++|+|.+-|. T Consensus 120 ~~ki~vi~va~llA~aI~ 137 (149) T d1dkua2 120 IERFKQLSVGPLLAEAII 137 (149) T ss_dssp CSSEEEECCHHHHHHHHH T ss_pred CCCCEEEEHHHHHHHHHH T ss_conf 688089875999999999 No 9 >d1j5ua_ d.208.1.1 (A:) Hypothetical protein TM1083 {Thermotoga maritima [TaxId: 2336]} Probab=5.11 E-value=56 Score=13.59 Aligned_cols=17 Identities=12% Similarity=0.178 Sum_probs=7.3 Q ss_pred EECHHHHHHHHHHHHHH Q ss_conf 30168999999999744 Q 537021.9.peg.6 14 SISPLFSRFISIYLLIF 30 (46) Q Consensus 14 sisplfsrfisiyllif 30 (46) +..-|+-+|++-.|..| T Consensus 55 d~e~LL~~~L~Ell~l~ 71 (127) T d1j5ua_ 55 ETEDAFFDTVNDWILEI 71 (127) T ss_dssp CSHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHH T ss_conf 97999999999999986 No 10 >d1jw3a_ d.208.1.1 (A:) Hypothetical protein MTH1598 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=3.18 E-value=1e+02 Score=12.24 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=0.0 Q ss_pred EEEEEEECEEECH Q ss_conf 8863331213016 Q 537021.9.peg.6 5 VKVETYHNISISP 17 (46) Q Consensus 5 vkvetyhnisisp 17 (46) ||.-|||+..+.+ T Consensus 115 VKAvTyh~l~v~~ 127 (140) T d1jw3a_ 115 VKAVTFHMMEILD 127 (140) T ss_dssp CCBCCSCCCEEEE T ss_pred EEEEECCCEEEEE T ss_conf 6962355479998 Done!