Query         537021.9.peg.691_1
Match_columns 46
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Tue May 24 23:44:02 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_691.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2axth1 f.23.33.1 (H:2-65) Pho  46.3     6.9  0.0005   18.2   2.8   22   17-38     35-56  (64)
  2 d1xlya_ a.232.1.1 (A:) RNA-bin  32.4     6.6 0.00048   18.3   0.9   23   14-36     14-36  (232)
  3 d2axti1 f.23.37.1 (I:1-35) Pho   9.9      62  0.0045   13.4   2.1   23   18-40     11-33  (35)
  4 d1tdpa_ a.29.8.1 (A:) Carnobac   8.9      46  0.0033   14.0   0.7   22   15-36     50-71  (111)
  5 d1vf6a_ a.194.1.1 (A:) Associa   6.9      85  0.0062   12.7   1.5   13   13-25     30-42  (58)
  6 d1zkda1 c.66.1.52 (A:2-366) Hy   5.9      98  0.0071   12.4   1.5   21   10-30     51-71  (365)
  7 d1d9ca_ a.26.1.3 (A:) Interfer   5.8      98  0.0072   12.4   2.5   26   17-43     44-69  (121)
  8 d1dkua2 c.61.1.2 (A:167-315) P   5.4   1E+02  0.0075   12.3   1.1   18    7-24    120-137 (149)
  9 d1j5ua_ d.208.1.1 (A:) Hypothe   5.1      56  0.0041   13.6  -0.4   17   14-30     55-71  (127)
 10 d1jw3a_ d.208.1.1 (A:) Hypothe   3.2   1E+02  0.0076   12.2  -0.4   13    5-17    115-127 (140)

No 1  
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=46.28  E-value=6.9  Score=18.21  Aligned_cols=22  Identities=36%  Similarity=0.563  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             6899999999974415666568
Q 537021.9.peg.6   17 PLFSRFISIYLLIFNSAIPIKN   38 (46)
Q Consensus        17 plfsrfisiyllifnsaipikn   38 (46)
                      -||.-|..|.|-|+||.+.+.+
T Consensus        35 ~Lf~vfl~iiLeiYNss~lldg   56 (64)
T d2axth1          35 GLFLVFLLIILEIYNSTLILDG   56 (64)
T ss_dssp             HHHHHHHHHHHHHHTTSSCCTT
T ss_pred             HHHHHHHHHHHHHHCCCEEECC
T ss_conf             9999999999999464215426


No 2  
>d1xlya_ a.232.1.1 (A:) RNA-binding protein She2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.37  E-value=6.6  Score=18.28  Aligned_cols=23  Identities=35%  Similarity=0.597  Sum_probs=18.4

Q ss_pred             EECHHHHHHHHHHHHHHCCCCCC
Q ss_conf             30168999999999744156665
Q 537021.9.peg.6   14 SISPLFSRFISIYLLIFNSAIPI   36 (46)
Q Consensus        14 sisplfsrfisiyllifnsaipi   36 (46)
                      .|.++||++||-|.-+.|.-|.+
T Consensus        14 qi~~~~s~YiS~yv~~LNk~I~~   36 (232)
T d1xlya_          14 QILALLSRYLSSYIHVLNKFISH   36 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999


No 3  
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.87  E-value=62  Score=13.37  Aligned_cols=23  Identities=26%  Similarity=0.538  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             89999999997441566656887
Q 537021.9.peg.6   18 LFSRFISIYLLIFNSAIPIKNPI   40 (46)
Q Consensus        18 lfsrfisiyllifnsaipiknpi   40 (46)
                      ...-|+|++..-|-|.-|-.||-
T Consensus        11 vV~fFv~lFiFGFLSnDP~RnP~   33 (35)
T d2axti1          11 VVTFFVLLFVFGFLSGDPARNPK   33 (35)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCSSC
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             89999999998630589988989


No 4  
>d1tdpa_ a.29.8.1 (A:) Carnobacteriocin B2 immunity protein {Carnobacterium piscicola [TaxId: 2751]}
Probab=8.89  E-value=46  Score=14.04  Aligned_cols=22  Identities=41%  Similarity=0.505  Sum_probs=17.4

Q ss_pred             ECHHHHHHHHHHHHHHCCCCCC
Q ss_conf             0168999999999744156665
Q 537021.9.peg.6   15 ISPLFSRFISIYLLIFNSAIPI   36 (46)
Q Consensus        15 isplfsrfisiyllifnsaipi   36 (46)
                      .-.+.||-||-|.||...+||-
T Consensus        50 vvt~LS~~ISkYYL~H~~~iP~   71 (111)
T d1tdpa_          50 VISLLSRGISSYYLSHKRIIPS   71 (111)
T ss_dssp             HHHHHHHHHHHTCTTSCCCCCG
T ss_pred             HHHHHHCCHHHHHHHHCCCCCH
T ss_conf             9999831247788774011859


No 5  
>d1vf6a_ a.194.1.1 (A:) Associated tight junction protein Pals-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.94  E-value=85  Score=12.69  Aligned_cols=13  Identities=31%  Similarity=0.680  Sum_probs=8.9

Q ss_pred             EEECHHHHHHHHH
Q ss_conf             1301689999999
Q 537021.9.peg.6   13 ISISPLFSRFISI   25 (46)
Q Consensus        13 isisplfsrfisi   25 (46)
                      .--||||+...+.
T Consensus        30 ~LqSPLF~qiL~l   42 (58)
T d1vf6a_          30 TLKSPLFNQILTL   42 (58)
T ss_dssp             HHHCHHHHHHHHH
T ss_pred             HHHCHHHHHHHHH
T ss_conf             9868789999999


No 6  
>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=5.88  E-value=98  Score=12.38  Aligned_cols=21  Identities=14%  Similarity=0.319  Sum_probs=16.0

Q ss_pred             EECEEECHHHHHHHHHHHHHH
Q ss_conf             312130168999999999744
Q 537021.9.peg.6   10 YHNISISPLFSRFISIYLLIF   30 (46)
Q Consensus        10 yhnisisplfsrfisiyllif   30 (46)
                      |..-++||+|...|+.+++-.
T Consensus        51 ~Tsp~is~~Fg~~ia~~~~~~   71 (365)
T d1zkda1          51 TTSPEISQMFGELLGLWSASV   71 (365)
T ss_dssp             CSHHHHCHHHHHHHHHHHHHH
T ss_pred             ECCCCHHHHHHHHHHHHHHHH
T ss_conf             788734799999999999999


No 7  
>d1d9ca_ a.26.1.3 (A:) Interferon-gamma {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.83  E-value=98  Score=12.36  Aligned_cols=26  Identities=23%  Similarity=0.415  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf             689999999997441566656887200
Q 537021.9.peg.6   17 PLFSRFISIYLLIFNSAIPIKNPIPQS   43 (46)
Q Consensus        17 plfsrfisiyllifnsaipiknpipqs   43 (46)
                      -+.|+.+|+|+-+|. +.+---++..|
T Consensus        44 IilSqIvs~Y~kife-nl~~~~~~~~s   69 (121)
T d1d9ca_          44 IIQSQIVSFYFKLFE-NLKDNQVIQRS   69 (121)
T ss_dssp             HHHHHHHHHHHHHHH-TTTTCTTTHHH
T ss_pred             HHHHHHHHHHHHHHH-HCCCCCHHHHH
T ss_conf             999999999999998-17566015756


No 8  
>d1dkua2 c.61.1.2 (A:167-315) Phosphoribosylpyrophosphate synthetase {Bacillus subtilis [TaxId: 1423]}
Probab=5.38  E-value=1e+02  Score=12.26  Aligned_cols=18  Identities=28%  Similarity=0.674  Sum_probs=13.4

Q ss_pred             EEEEECEEECHHHHHHHH
Q ss_conf             633312130168999999
Q 537021.9.peg.6    7 VETYHNISISPLFSRFIS   24 (46)
Q Consensus         7 vetyhnisisplfsrfis   24 (46)
                      .+.++-+|++|+|.+-|.
T Consensus       120 ~~ki~vi~va~llA~aI~  137 (149)
T d1dkua2         120 IERFKQLSVGPLLAEAII  137 (149)
T ss_dssp             CSSEEEECCHHHHHHHHH
T ss_pred             CCCCEEEEHHHHHHHHHH
T ss_conf             688089875999999999


No 9  
>d1j5ua_ d.208.1.1 (A:) Hypothetical protein TM1083 {Thermotoga maritima [TaxId: 2336]}
Probab=5.11  E-value=56  Score=13.59  Aligned_cols=17  Identities=12%  Similarity=0.178  Sum_probs=7.3

Q ss_pred             EECHHHHHHHHHHHHHH
Q ss_conf             30168999999999744
Q 537021.9.peg.6   14 SISPLFSRFISIYLLIF   30 (46)
Q Consensus        14 sisplfsrfisiyllif   30 (46)
                      +..-|+-+|++-.|..|
T Consensus        55 d~e~LL~~~L~Ell~l~   71 (127)
T d1j5ua_          55 ETEDAFFDTVNDWILEI   71 (127)
T ss_dssp             CSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
T ss_conf             97999999999999986


No 10 
>d1jw3a_ d.208.1.1 (A:) Hypothetical protein MTH1598 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=3.18  E-value=1e+02  Score=12.24  Aligned_cols=13  Identities=38%  Similarity=0.516  Sum_probs=0.0

Q ss_pred             EEEEEEECEEECH
Q ss_conf             8863331213016
Q 537021.9.peg.6    5 VKVETYHNISISP   17 (46)
Q Consensus         5 vkvetyhnisisp   17 (46)
                      ||.-|||+..+.+
T Consensus       115 VKAvTyh~l~v~~  127 (140)
T d1jw3a_         115 VKAVTFHMMEILD  127 (140)
T ss_dssp             CCBCCSCCCEEEE
T ss_pred             EEEEECCCEEEEE
T ss_conf             6962355479998


Done!