RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.691_1 (46 letters) >gnl|CDD|163289 TIGR03491, TIGR03491, RecB family nuclease, putative, TM0106 family. Members of this uncharacterized protein family are found broadly but sporadically among bacteria. The N-terminal region is homologous to the Cas4 protein of CRISPR systems, although this protein family shows no signs of association with CRISPR repeats. Length = 457 Score = 26.5 bits (59), Expect = 1.5 Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Query: 14 SISPLFSRFISIYLLIFNS-AIPIKN 38 I L RF+ I+ ++ S +PI++ Sbjct: 371 EIEELLKRFVDIHTIVRRSWILPIES 396 >gnl|CDD|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4; Provisional. Length = 915 Score = 26.1 bits (57), Expect = 2.2 Identities = 12/19 (63%), Positives = 16/19 (84%), Gaps = 1/19 (5%) Query: 12 NISISP-LFSRFISIYLLI 29 NI+ISP LF+RF IYL++ Sbjct: 623 NINISPSLFTRFDLIYLVL 641 >gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional. Length = 1470 Score = 24.4 bits (53), Expect = 7.2 Identities = 10/22 (45%), Positives = 14/22 (63%) Query: 9 TYHNISISPLFSRFISIYLLIF 30 TY++I +P SRF LL+F Sbjct: 636 TYYSIGFAPEASRFFKQLLLVF 657 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.328 0.140 0.409 Gapped Lambda K H 0.267 0.0721 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 709,759 Number of extensions: 25944 Number of successful extensions: 95 Number of sequences better than 10.0: 1 Number of HSP's gapped: 95 Number of HSP's successfully gapped: 12 Length of query: 46 Length of database: 5,994,473 Length adjustment: 19 Effective length of query: 27 Effective length of database: 5,583,921 Effective search space: 150765867 Effective search space used: 150765867 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 50 (23.1 bits)