HHsearch alignment for GI: peg_74 and conserved domain: cd01049
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=100.00 E-value=1.6e-39 Score=280.31 Aligned_cols=152 Identities=39% Similarity=0.713 Sum_probs=143.3
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 20087627899999999985049833467346168520401489899999999999997763677777788887652868
Q 537021.9.peg.7 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 (196)
Q Consensus 32 ~~l~PikY~~~~~~yk~~~~~fW~peEI~l~~D~~dw~~~~~Lt~~Er~~~~~iL~ffs~~D~~v~~nl~~~i~~~i~~p 111 (196)
T Consensus 1 ~~~~p~~y~~~~~~y~~~~~~fW~~eEi~l~~D~~dw~~---lt~~ek~~~~~~La~~~~~D~~v~~~~~~~~~~~~~~p 77 (288)
T cd01049 1 FNLNPIKYPWAWELYKKAEANFWTPEEIDLSKDLKDWEK---LTEAERHFIKRVLAFLAALDSIVGENLVELFSRHVQIP 77 (288)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 987887777999999999877998310073621999987---99999999999999999985688733899987635878
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999999999999999999823763--68999995099999999999999985301133447933489999999
Q 537021.9.peg.7 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRS 189 (196)
Q Consensus 112 E~~~~~~~q~~~E~iHs~sYs~il~tl~~d~--~eif~~~~~~p~i~~K~~~~~k~~~~i~~~~~~~~~~e~~~~~l~~l 189 (196)
T Consensus 78 E~~~~~~~q~~~E~iHs~sYs~il~~l~~~~~~~~~f~~~~~~~~i~~k~~~~~~~~~~~~~~--------~~~~~~~~l 149 (288)
T cd01049 78 EARAFYGFQAFMENIHSESYSYILDTLGKDEERDELFEAIETDPALKKKADWILRWYDNLDDN--------TKESFAERL 149 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC--------CHHHHHHHH
T ss_conf 999999999999999999999999986798778999999852799999999999999723352--------168999999
Q ss_pred HHHHH
Q ss_conf 99963
Q 537021.9.peg.7 190 LRFLC 194 (196)
Q Consensus 190 i~f~~ 194 (196)
T Consensus 150 i~~~~ 154 (288)
T cd01049 150 VAFAI 154 (288)
T ss_pred HHHHH
T ss_conf 99999