RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.74_1 (196 letters) >1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune evasion, replication; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 2ani_A Length = 346 Score = 164 bits (415), Expect = 1e-41 Identities = 95/186 (51%), Positives = 133/186 (71%), Gaps = 2/186 (1%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +KRVN++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188 HTF YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F + + Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184 Query: 189 SLRFLC 194 + + Sbjct: 185 LVGYYI 190 >1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Length = 419 Score = 152 bits (384), Expect = 6e-38 Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 9/175 (5%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W ++ + ++ER Sbjct: 95 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNR--MNENERF 152 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 153 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 212 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192 D E LFN +P I KA WAL++ Q + + +R + + F Sbjct: 213 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ----DADALFGERLVAFASIEGVFF 263 >1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Length = 345 Score = 142 bits (359), Expect = 4e-35 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 5/147 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W Y + W E+ + D ++ LTDD++ I L SS+ Sbjct: 37 MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIGNLLALSISSD 93 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYRE 151 +LV ++ L NPE + + Q E ++S + ++ + D LF Sbjct: 94 NLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIAN 153 Query: 152 VPSITAKANWALQYTQTLSSPSFHYWN 178 +P + KA + ++ S Sbjct: 154 LPEVKHKAAFIERWISNDDSLYAERLV 180 >1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Length = 390 Score = 140 bits (354), Expect = 2e-34 Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 6/168 (3%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +V+D+ +L + P++Y W+ Y A + W EV + D+ W++ Sbjct: 63 PTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA--- 119 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L DER I L FFA+S+ +V N+V + + E R + Q E +HS + Sbjct: 120 LKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSL 179 Query: 134 IITSLGLDEGELFNM---YREVPSITAKANWALQYTQTLSSPSFHYWN 178 +I + D E + +P + KA+WAL++ + Sbjct: 180 LIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVV 227 >3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A 1uzr_A* Length = 329 Score = 136 bits (344), Expect = 3e-33 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 5/133 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + E + N W+P ++P+ +D+ W +T E+L R +++ Sbjct: 24 IPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNK---MTPQEQLATMRVFTGLTLLDTIQ 80 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPS 154 +++ AF E+VH+ ++ I +L E F E + Sbjct: 81 GTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENEN 140 Query: 155 ITAKANWALQYTQ 167 + KA + Y Sbjct: 141 LQRKAKIIMSYYN 153 >1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 1yfd_A 1piy_A 1r65_A 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A 1av8_A 1pfr_A ... Length = 375 Score = 135 bits (341), Expect = 6e-33 Identities = 30/146 (20%), Positives = 61/146 (41%), Gaps = 3/146 (2%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 V + KY + + W P EV + D +++ L + E+ + NL + Sbjct: 25 VARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQT 81 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 +S+ + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ Sbjct: 82 LLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIV 141 Query: 151 EVPSITAKANWALQYTQTLSSPSFHY 176 I +A Y L + ++ Sbjct: 142 TNEQIQKRAEGISSYYDELIEMTSYW 167 >1r2f_A Protein (ribonucleotide reductase R2); nucleotide metabolism, oxidoreductase; 2.10A {Salmonella typhimurium} SCOP: a.25.1.2 PDB: 2bq1_I* 2r2f_A Length = 319 Score = 119 bits (298), Expect = 5e-28 Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 5/133 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R +++ Sbjct: 14 IQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLLDTIQ 70 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPS 154 ++ P L +F EAVH+ ++ I ++L + + E P Sbjct: 71 NIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENPP 130 Query: 155 ITAKANWALQYTQ 167 + KA L + Sbjct: 131 LQRKAQIILAHYV 143 >3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} PDB: 1uzr_A* Length = 296 Score = 118 bits (297), Expect = 8e-28 Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 5/131 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + E + N W+P ++P+ +D+ W +T E+L R +++ Sbjct: 23 IPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNK---MTPQEQLATMRVFTGLTLLDTIQ 79 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPS 154 +++ AF E+VH+ ++ I +L E F E + Sbjct: 80 GTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENEN 139 Query: 155 ITAKANWALQY 165 + KA + Y Sbjct: 140 LQRKAKIIMSY 150 >3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Length = 319 Score = 117 bits (295), Expect = 1e-27 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 5/134 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + E + +N W+P +VP+ +D+ W++ LT E+ + R ++L Sbjct: 14 ISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLLDTLQ 70 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPS 154 ++ P L +F EAVH+ ++ I ++L D + E Sbjct: 71 NVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSEENAP 130 Query: 155 ITAKANWALQYTQT 168 + KA Q+ + Sbjct: 131 LQRKAQIIQQHYRG 144 >2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, structural genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii str} Length = 349 Score = 115 bits (289), Expect = 6e-27 Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 6/160 (3%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 ++ ++++LN S+ L P+ Y W Y A + W E+ + DL ++ L Sbjct: 24 QKSKESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEK---L 80 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +E+ IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ + Sbjct: 81 NVNEKHFIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLL 140 Query: 135 ITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSS 171 I + D LF+ +P+I KA WA ++ +S Sbjct: 141 IDNYIKDEKERLNLFHAIENIPAIKNKALWAAKWINDTNS 180 >2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Length = 311 Score = 111 bits (278), Expect = 1e-25 Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++++L+ +D L P+ Y W+ Y A + W E+ + DL ++ L D+E+ Sbjct: 29 NEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEK---LNDNEKH 85 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +I + Sbjct: 86 FIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIK 145 Query: 141 D---EGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178 D LF+ +P++ KA WA ++ +S + Sbjct: 146 DEKERMNLFHAIENIPAVKNKALWAAKWINDTNSFAERIVA 186 >2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Length = 346 Score = 108 bits (269), Expect = 1e-24 Identities = 30/152 (19%), Positives = 69/152 (45%), Gaps = 7/152 (4%) Query: 21 DKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 +LN + S+V +++ WA+ Y + N W P E+ M D + + LT+ E+ Sbjct: 19 STGILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPT---LTETEQ 75 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 K+ +G A +S V + + +L++ + +F+E VH+ ++ Y+++SL Sbjct: 76 EAFKKIIGLLAFLDS-VQTDYSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLV 134 Query: 140 LDEGE--LFNMYREVPSITAKANWALQYTQTL 169 + +F ++ + + + + + Sbjct: 135 PKATQDEIFEYWKHDDVLKERNEFIIDGYEKF 166 >3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, cavity, monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} Length = 323 Score = 106 bits (265), Expect = 4e-24 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 6/120 (5%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLA 103 + W P ++ D A W+ L+DDER R F + E V +I ++ Sbjct: 33 FAGGNAKFWHPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEEAVTEDIQPFMS 89 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163 R YL + AFEEA H+ F+ + ++G+ E ++P+ L Sbjct: 90 AMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDL-HRYLDDLPAYRQIFYAEL 148 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 38.0 bits (88), Expect = 0.001 Identities = 31/207 (14%), Positives = 52/207 (25%), Gaps = 99/207 (47%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 ML+ + L + + Y++ N+H L +++ I Sbjct: 338 MLSISN-----LTQE---QVQDYVNKTNSH--------------------LPAGKQVEI- 368 Query: 84 RNLGFFASSESLV--ANNIVLA-----IY---RHLSNPECRQYLLRQA---FEE------ 124 SLV A N+V++ +Y L + L Q+ F E Sbjct: 369 ----------SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG-LDQSRIPFSERKLKFS 417 Query: 125 ------AV--HSH----TFQYIITSLGLDEGEL---------FNMY-----RE-----VP 153 A HSH I L + ++ + R Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477 Query: 154 S----ITAKA-NWALQYTQTLSSPSFH 175 I W T + H Sbjct: 478 RIVDCIIRLPVKW----ETTTQFKATH 500 Score = 32.2 bits (73), Expect = 0.075 Identities = 32/192 (16%), Positives = 49/192 (25%), Gaps = 73/192 (38%) Query: 56 PTEVPMQDD-----LALW------------KSKNGLTDDERLMIKRNLGFFASSESLVAN 98 PTE DD L SK G D ++ L F + L N Sbjct: 44 PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ---VLNLCLTEF-ENCYLEGN 99 Query: 99 NI--------------------VLAIY---RHLSNPECRQY----LLRQAFEEAVHSHT- 130 +I ++ Y R ++ + L R E Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159 Query: 131 F--Q-----YIITSLGLDE-GELFNMYRE-VPSITAKANWALQYTQTLSSPSFHYWNKRR 181 F Q Y +E +L+ Y V + + L L Sbjct: 160 FGGQGNTDDY------FEELRDLYQTYHVLVGDLIKFSAETL---SELIR------TTLD 204 Query: 182 RSRILTRSLRFL 193 ++ T+ L L Sbjct: 205 AEKVFTQGLNIL 216 >2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus} Length = 345 Score = 27.8 bits (62), Expect = 1.8 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 5/88 (5%) Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 T +E + L +E L A N+ + R+ + R+ LL A EE H F Sbjct: 15 YTKEE---LMEILRLAIIAE-LDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMA 70 Query: 134 IITSLGLDE-GELFNMYREVPSITAKAN 160 ++ +L ++ EL + EV +T Sbjct: 71 LLLNLDPEQVTELKGGFEEVKELTGIEA 98 >3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A* Length = 495 Score = 27.5 bits (60), Expect = 1.8 Identities = 7/68 (10%), Positives = 20/68 (29%), Gaps = 3/68 (4%) Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS-NPECRQYLLRQA 121 ++ + K G++ +E F + + + R + L + Sbjct: 267 GEILVEADKLGISREEATHNLLFATCFNTWGG-MKILFPNMVKRIGRAGHQV-HNRLAEE 324 Query: 122 FEEAVHSH 129 + S+ Sbjct: 325 IRSVIKSN 332 >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Length = 207 Score = 27.7 bits (60), Expect = 1.9 Identities = 7/37 (18%), Positives = 12/37 (32%) Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 R + Q L A E F ++ + L+ Sbjct: 154 RGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLES 190 >3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A Length = 336 Score = 26.8 bits (59), Expect = 3.1 Identities = 7/44 (15%), Positives = 20/44 (45%), Gaps = 4/44 (9%) Query: 93 ESLVAN----NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 E L+A ++ ++ +P R+ + + +E+ H++ Sbjct: 101 EQLIAEPAFDLVMHGVFPGSDDPLIRKSVQQAIVDESFHTYMHM 144 >3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A* Length = 473 Score = 26.8 bits (58), Expect = 3.7 Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 1/72 (1%) Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 + K G+ DE + F + V + E L + Sbjct: 249 TPVMEQAEKLGVPKDEAVHNILFAVCFNTFGG-VKILFPNTLKWIGLAGENLHTQLAEEI 307 Query: 123 EEAVHSHTFQYI 134 A+ S+ + Sbjct: 308 RGAIKSYGDGNV 319 >2htd_A Predicted flavin-nucleotide-binding protein from COG3576 family structurally related...; ZP_00387536.1, structural genomics; HET: MSE; 1.60A {Lactobacillus delbrueckii subsp} Length = 140 Score = 25.4 bits (55), Expect = 9.3 Identities = 6/18 (33%), Positives = 12/18 (66%) Query: 74 LTDDERLMIKRNLGFFAS 91 LT+++ + K NL + A+ Sbjct: 28 LTEEQVNLFKNNLVYLAT 45 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.321 0.133 0.411 Gapped Lambda K H 0.267 0.0499 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,705,593 Number of extensions: 72522 Number of successful extensions: 198 Number of sequences better than 10.0: 1 Number of HSP's gapped: 181 Number of HSP's successfully gapped: 26 Length of query: 196 Length of database: 5,693,230 Length adjustment: 87 Effective length of query: 109 Effective length of database: 3,584,002 Effective search space: 390656218 Effective search space used: 390656218 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (25.1 bits)