RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.74_1
         (196 letters)



>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen
           activation, iron coupled radical, immune evasion,
           replication; 1.70A {Chlamydia trachomatis} SCOP:
           a.25.1.2 PDB: 2ani_A
          Length = 346

 Score =  164 bits (415), Expect = 1e-41
 Identities = 95/186 (51%), Positives = 133/186 (71%), Gaps = 2/186 (1%)

Query: 10  IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +KRVN++ KR++N  + DVNQL+P+KY WAWE YL+ C N+W+PTE+PM  D+ LW
Sbjct: 6   LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS + L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66  KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTR 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ ++ T  +  P+F   +       +  
Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184

Query: 189 SLRFLC 194
            + +  
Sbjct: 185 LVGYYI 190


>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
           ribonucleotide reductase, oxidoreductase; 2.80A
           {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
          Length = 419

 Score =  152 bits (384), Expect = 6e-38
 Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 9/175 (5%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W ++  + ++ER 
Sbjct: 95  EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNR--MNENERF 152

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 153 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 212

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFHYWNKRRRSRILTRSLRF 192
           D  E   LFN    +P I  KA WAL++ Q     +   + +R  +      + F
Sbjct: 213 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ----DADALFGERLVAFASIEGVFF 263


>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2;
           ribonucleotide reductase, oxidoreductase; 2.80A
           {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A
          Length = 345

 Score =  142 bits (359), Expect = 4e-35
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 5/147 (3%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+KY   W  Y     + W   E+ +  D   ++    LTDD++  I   L    SS+
Sbjct: 37  MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIGNLLALSISSD 93

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYRE 151
           +LV   ++      L NPE + +   Q   E ++S  +  ++ +   D     LF     
Sbjct: 94  NLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIAN 153

Query: 152 VPSITAKANWALQYTQTLSSPSFHYWN 178
           +P +  KA +  ++     S       
Sbjct: 154 LPEVKHKAAFIERWISNDDSLYAERLV 180


>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase,
           ribonucleotide reductase, dinuclear metal-cluster; 2.2A
           {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A
           1xsm_A 2uw2_A 3hf1_A 2vux_A
          Length = 390

 Score =  140 bits (354), Expect = 2e-34
 Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 6/168 (3%)

Query: 14  EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
               +V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W++   
Sbjct: 63  PTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA--- 119

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
           L  DER  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  
Sbjct: 120 LKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSL 179

Query: 134 IITSLGLDEGELFNM---YREVPSITAKANWALQYTQTLSSPSFHYWN 178
           +I +   D  E   +      +P +  KA+WAL++     +       
Sbjct: 180 LIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVV 227


>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond,
           metal binding protein; 1.63A {Corynebacterium
           ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A
           1kgn_A 1uzr_A*
          Length = 329

 Score =  136 bits (344), Expect = 3e-33
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 5/133 (3%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +      E +     N W+P ++P+ +D+  W     +T  E+L   R        +++ 
Sbjct: 24  IPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNK---MTPQEQLATMRVFTGLTLLDTIQ 80

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPS 154
                +++                AF E+VH+ ++  I  +L       E F    E  +
Sbjct: 81  GTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENEN 140

Query: 155 ITAKANWALQYTQ 167
           +  KA   + Y  
Sbjct: 141 LQRKAKIIMSYYN 153


>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron,
           oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2
           PDB: 1jpr_A 1jqc_A 1xik_A 1yfd_A 1piy_A 1r65_A 1biq_B*
           1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A
           1rnr_A* 1pj0_A 1pj1_A 1av8_A 1pfr_A ...
          Length = 375

 Score =  135 bits (341), Expect = 6e-33
 Identities = 30/146 (20%), Positives = 61/146 (41%), Gaps = 3/146 (2%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
           V +    KY    +      +  W P EV +  D   +++   L + E+ +   NL +  
Sbjct: 25  VARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQT 81

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             +S+   +  +A+   +S PE   ++   AF E +HS ++ +II ++  D   +F+   
Sbjct: 82  LLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIV 141

Query: 151 EVPSITAKANWALQYTQTLSSPSFHY 176
               I  +A     Y   L   + ++
Sbjct: 142 TNEQIQKRAEGISSYYDELIEMTSYW 167


>1r2f_A Protein (ribonucleotide reductase R2); nucleotide metabolism,
           oxidoreductase; 2.10A {Salmonella typhimurium} SCOP:
           a.25.1.2 PDB: 2bq1_I* 2r2f_A
          Length = 319

 Score =  119 bits (298), Expect = 5e-28
 Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 5/133 (3%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        +++ 
Sbjct: 14  IQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLLDTIQ 70

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPS 154
                 ++      P     L   +F EAVH+ ++  I ++L   +     +    E P 
Sbjct: 71  NIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENPP 130

Query: 155 ITAKANWALQYTQ 167
           +  KA   L +  
Sbjct: 131 LQRKAQIILAHYV 143


>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase,
           RNR, radical enzyme, split SIGN metallocofactor; 1.36A
           {Corynebacterium ammoniagenes} PDB: 1uzr_A*
          Length = 296

 Score =  118 bits (297), Expect = 8e-28
 Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 5/131 (3%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +      E +     N W+P ++P+ +D+  W     +T  E+L   R        +++ 
Sbjct: 23  IPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNK---MTPQEQLATMRVFTGLTLLDTIQ 79

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPS 154
                +++                AF E+VH+ ++  I  +L       E F    E  +
Sbjct: 80  GTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENEN 139

Query: 155 ITAKANWALQY 165
           +  KA   + Y
Sbjct: 140 LQRKAKIIMSY 150


>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide
           reductase, four-helix bundle, dimanganese CLU
           oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A
           3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
          Length = 319

 Score =  117 bits (295), Expect = 1e-27
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 5/134 (3%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +      E +    +N W+P +VP+ +D+  W++   LT  E+ +  R        ++L 
Sbjct: 14  ISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLLDTLQ 70

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPS 154
                 ++      P     L   +F EAVH+ ++  I ++L    D    +    E   
Sbjct: 71  NVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSEENAP 130

Query: 155 ITAKANWALQYTQT 168
           +  KA    Q+ + 
Sbjct: 131 LQRKAQIIQQHYRG 144


>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb
           PY03671, structural genomics consortium, SGC,
           oxidoreductase; 2.70A {Plasmodium yoelii yoelii str}
          Length = 349

 Score =  115 bits (289), Expect = 6e-27
 Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 15  KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
           ++    ++++LN  S+   L P+ Y   W  Y  A  + W   E+ +  DL  ++    L
Sbjct: 24  QKSKESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEK---L 80

Query: 75  TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
             +E+  IK  L FFA+S+ +V  N+     R +   E +++   Q   E +HS T+  +
Sbjct: 81  NVNEKHFIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLL 140

Query: 135 ITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSS 171
           I +   D      LF+    +P+I  KA WA ++    +S
Sbjct: 141 IDNYIKDEKERLNLFHAIENIPAIKNKALWAAKWINDTNS 180


>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide
           reductase, oxidoreductase, DNA replication, iron,
           DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
          Length = 311

 Score =  111 bits (278), Expect = 1e-25
 Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++++L+  +D   L P+ Y   W+ Y  A  + W   E+ +  DL  ++    L D+E+ 
Sbjct: 29  NEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEK---LNDNEKH 85

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            IK  L FFA+S+ +V  N+     R +   E +++   Q   E +HS T+  +I +   
Sbjct: 86  FIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIK 145

Query: 141 D---EGELFNMYREVPSITAKANWALQYTQTLSSPSFHYWN 178
           D      LF+    +P++  KA WA ++    +S +     
Sbjct: 146 DEKERMNLFHAIENIPAVKNKALWAAKWINDTNSFAERIVA 186


>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1,
           putative class I ribonucleotide reductase,
           ribonucleotide reductase; HET: MSE PGE PG4; 1.90A
           {Bacillus halodurans c-125}
          Length = 346

 Score =  108 bits (269), Expect = 1e-24
 Identities = 30/152 (19%), Positives = 69/152 (45%), Gaps = 7/152 (4%)

Query: 21  DKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
              +LN + S+V     +++ WA+  Y +   N W P E+ M  D   + +   LT+ E+
Sbjct: 19  STGILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPT---LTETEQ 75

Query: 80  LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
              K+ +G  A  +S V  +  +    +L++      +   +F+E VH+ ++ Y+++SL 
Sbjct: 76  EAFKKIIGLLAFLDS-VQTDYSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLV 134

Query: 140 LDEGE--LFNMYREVPSITAKANWALQYTQTL 169
               +  +F  ++    +  +  + +   +  
Sbjct: 135 PKATQDEIFEYWKHDDVLKERNEFIIDGYEKF 166


>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron,
           DIIRON, carboxylate, oxidase, ligand, cavity,
           monooxygenase; HET: MYR; 1.90A {Mycobacterium
           tuberculosis}
          Length = 323

 Score =  106 bits (265), Expect = 4e-24
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 46  YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLA 103
           +       W P ++    D A W+    L+DDER    R    F + E  V  +I   ++
Sbjct: 33  FAGGNAKFWHPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEEAVTEDIQPFMS 89

Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163
             R         YL + AFEEA H+  F+  + ++G+ E        ++P+        L
Sbjct: 90  AMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDL-HRYLDDLPAYRQIFYAEL 148


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 31/207 (14%), Positives = 52/207 (25%), Gaps = 99/207 (47%)

Query: 24  MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
           ML+  +     L  +     + Y++  N+H                    L   +++ I 
Sbjct: 338 MLSISN-----LTQE---QVQDYVNKTNSH--------------------LPAGKQVEI- 368

Query: 84  RNLGFFASSESLV--ANNIVLA-----IY---RHLSNPECRQYLLRQA---FEE------ 124
                     SLV  A N+V++     +Y     L   +     L Q+   F E      
Sbjct: 369 ----------SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG-LDQSRIPFSERKLKFS 417

Query: 125 ------AV--HSH----TFQYIITSLGLDEGEL---------FNMY-----RE-----VP 153
                 A   HSH        I   L  +             ++ +     R        
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477

Query: 154 S----ITAKA-NWALQYTQTLSSPSFH 175
                I      W      T    + H
Sbjct: 478 RIVDCIIRLPVKW----ETTTQFKATH 500



 Score = 32.2 bits (73), Expect = 0.075
 Identities = 32/192 (16%), Positives = 49/192 (25%), Gaps = 73/192 (38%)

Query: 56  PTEVPMQDD-----LALW------------KSKNGLTDDERLMIKRNLGFFASSESLVAN 98
           PTE    DD       L              SK G  D    ++   L  F  +  L  N
Sbjct: 44  PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ---VLNLCLTEF-ENCYLEGN 99

Query: 99  NI--------------------VLAIY---RHLSNPECRQY----LLRQAFEEAVHSHT- 130
           +I                    ++  Y   R ++     +     L R   E        
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159

Query: 131 F--Q-----YIITSLGLDE-GELFNMYRE-VPSITAKANWALQYTQTLSSPSFHYWNKRR 181
           F  Q     Y       +E  +L+  Y   V  +   +   L     L            
Sbjct: 160 FGGQGNTDDY------FEELRDLYQTYHVLVGDLIKFSAETL---SELIR------TTLD 204

Query: 182 RSRILTRSLRFL 193
             ++ T+ L  L
Sbjct: 205 AEKVFTQGLNIL 216


>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus
           furiosus}
          Length = 345

 Score = 27.8 bits (62), Expect = 1.8
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 74  LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
            T +E   +   L     +E L A N+   + R+  +   R+ LL  A EE  H   F  
Sbjct: 15  YTKEE---LMEILRLAIIAE-LDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMA 70

Query: 134 IITSLGLDE-GELFNMYREVPSITAKAN 160
           ++ +L  ++  EL   + EV  +T    
Sbjct: 71  LLLNLDPEQVTELKGGFEEVKELTGIEA 98


>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
           biosynthesis, heme, iron, lipid synthesis, lyase,
           metal-binding; HET: HEM T25; 1.55A {Arabidopsis
           thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A*
           3cli_A*
          Length = 495

 Score = 27.5 bits (60), Expect = 1.8
 Identities = 7/68 (10%), Positives = 20/68 (29%), Gaps = 3/68 (4%)

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS-NPECRQYLLRQA 121
            ++ +   K G++ +E          F +    +       + R      +     L + 
Sbjct: 267 GEILVEADKLGISREEATHNLLFATCFNTWGG-MKILFPNMVKRIGRAGHQV-HNRLAEE 324

Query: 122 FEEAVHSH 129
               + S+
Sbjct: 325 IRSVIKSN 332


>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase; 2.10A
           {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
           1zny_A* 1znz_A* 1s4q_A 1z8f_A
          Length = 207

 Score = 27.7 bits (60), Expect = 1.9
 Identities = 7/37 (18%), Positives = 12/37 (32%)

Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
           R     +  Q  L  A  E      F  ++ +  L+ 
Sbjct: 154 RGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLES 190


>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase;
           2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A*
           3chu_A 2jcd_A
          Length = 336

 Score = 26.8 bits (59), Expect = 3.1
 Identities = 7/44 (15%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 93  ESLVAN----NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
           E L+A      ++  ++    +P  R+ + +   +E+ H++   
Sbjct: 101 EQLIAEPAFDLVMHGVFPGSDDPLIRKSVQQAIVDESFHTYMHM 144


>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
           acid biosynthesis, heme, iron, lipid synthesis, lyase,
           metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
           PDB: 3dam_A* 3dbm_A*
          Length = 473

 Score = 26.8 bits (58), Expect = 3.7
 Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 1/72 (1%)

Query: 63  DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
             +     K G+  DE +        F +    V       +       E     L +  
Sbjct: 249 TPVMEQAEKLGVPKDEAVHNILFAVCFNTFGG-VKILFPNTLKWIGLAGENLHTQLAEEI 307

Query: 123 EEAVHSHTFQYI 134
             A+ S+    +
Sbjct: 308 RGAIKSYGDGNV 319


>2htd_A Predicted flavin-nucleotide-binding protein from COG3576 family
          structurally related...; ZP_00387536.1, structural
          genomics; HET: MSE; 1.60A {Lactobacillus delbrueckii
          subsp}
          Length = 140

 Score = 25.4 bits (55), Expect = 9.3
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 74 LTDDERLMIKRNLGFFAS 91
          LT+++  + K NL + A+
Sbjct: 28 LTEEQVNLFKNNLVYLAT 45


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.321    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,705,593
Number of extensions: 72522
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 26
Length of query: 196
Length of database: 5,693,230
Length adjustment: 87
Effective length of query: 109
Effective length of database: 3,584,002
Effective search space: 390656218
Effective search space used: 390656218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)